Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2850 ATGAGCGGAAGTGGCAGAAAGACCTCTTCAAAGTGGGATTCGAGAGATGAATCTGAATTTTCATCTTATAGTAGTTCAAAGTGGTCCTATTTAGAAAGAAATGATAAGTTAAAACCCAGAATGGGGTTTTCATGCAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATACGGATGATTTTACAAATAAAGATTACAGAGTTTTGGATGCAACAGATGCATGGGACACTGATGGAAGTTACAGCATGACAATGTCTCCAGGGCCTGAGGATTGTAAAAATAAGTACAGTCAATCCCCAAAAGATGGTTGCAGTAGGTCAGTCAGGAGTAATCGGAGCAGAAGTAGGAGCTGGAGCCCTCCACATGGTTTTAGGTGGGATTCTGGAGTCAATGACAGATATAGAATGAGGGCTGGAGGATTGACACAACCATGTAGAGATTTTGCTGCTGGGAAATGCAGAAGAGGCAGCCAATGCCATTTCCTTCACCATGACAGTCAAAATTATGATGATAGCTGGGAAAGTAGACACAGGCAAGCTGGAACTCCCAGATATTCTGCTCCCCATGAGAGTGGGGAGTCTGGGGACTATTCTCGAACAAGTGGAAGATCTAATGAAACTTGTATCAATTATGCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTATGTGCATAACAACAATTCTGATCAGTTCAGTAAAGTTTCTGTGGATGAATCAACTAGGGAAAGGGAAATTGATAGAAGGCGCACGGAGAGTTCTTTCGAGCAGGGTGGTCGACATGCTACTAACCATAATGGTGATATTCCTtgcaaattttttgcatttgggAATTGCCGAAATGGTAAACATTGTAGGTTTTCTCATGATAGGCAAGCATGCGGGAGCCCAAATAGAAGATTCAGGGATGATAGGTCGAGGAGCAGTCAAGGTGGAGATCAGGCTTTGGATAGGCCAAAATTGAGTGATGAATTTAGTCCCAATGGAAGGCTAAGAGATGATAGATGGGGTTTAGATGGTAGTATGGCTGATGTAGATAAAGTTTGGGATGGTTCCAAACAGAATGATTTAGTTGTTGTTTCTGATATAGCAAAGCTGGTTGAGGATAAAAGAAATGGAATTATGGGCGCCCCAGAACCTGTATTCACTGCTTGGCCAATTAGTGATGGATGGGACCATAGCTTAGATAAGAAAAGAGTGCATGGTGAATCCCCATTTTCAAGTGATATGAAGGAAGCCAGTTGGGCAGCAAAAAATGATAGTGCCAACGTTCACACTTCCCAGTCAGTAGGCACAGACATTTGGCCTGGTAATGAAAAAATGTCTCCTGATTGGAATTATGGTGTGGGACCTTCCACCCATATTAAAGAAGAGCATGGGCAGAGTAAGCAACAAGTTGCTCCAGGACAAGTATTTCATCAGAATGTAAATGCTTTGCATTCTTCAAGCTGTCATGCAGTTGGACAGAGTCAAGTAGCAGCTTCCATTGTTCCTCCAAGAGTGAGAACTATTGAAGGTATGCAGAACCAGGAAGTCTCTGCGGAGAAAAAATACATTGTTGAGCCAAATATCATGGATGTAAACCTATCACAAGTTGGTTCAAGAAATCCTCCAACTCAGAACTTGGTAAGCAAAGAACAGCTAGCTCAACTTACTAGCCTGTCAGCCTCTCTGGCACATATCATCGGAACAGGTCGGCAGCTCCCACAACTTTATGCTACTTCTATTTCTCTAGATGCAAAGGATACTCCCTTCCTAAGCAAAACTGAAGGGTCTGGTAATCCTGTTTCCATAACATTCATCAAGCCGGATCCTGCTGTTGGATTCCAGAAGCAGTGTGATCCAATATGTAATAGTAGGGAGCCAAAGAATGCTAGTGCAAATGAGGTGCTCCCTACCTTTTCTCCAAgtaaaattattccaaaagatACAGTAGAAATTCCATCACTGTTATCTAAGTTAGGAAAAGAATTTGATGACTCTAAGTCTGCCTTTTTGGAAGAACAATTTGTCCAGATTGAACATTCAGTTCAGTTGCAGAAAGGTGAAAACGTTGAGGTTAATAAGGAGGACAAAGTGGTAGCCGAAGAAAAGCAAAGTTCTccatgtgaaaataaaattacagaaGAATATGGTCCTTTGGAAAACTTGGACCAAAACAGTGGACCTGATGAGGCCAAGAAAATAAAGGATGTGAAGGGGATTCgtgcatttaaattttcattggTTGAGTTCGTTAAGGAGCTTTTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGACAAAGTCACTGGTACAATGCAGCGGGTACATATTCCTCAGACACAAGAGAAAATTGACCGTTATTTATCATTATCAAAACCAAAGCTTAACAAACTAATACAGGCATATGTGGAAAAGGTTCAGAAGTCTTAG 2451 0.4031 MSGSGRKTSSKWDSRDESEFSSYSSSKWSYLERNDKLKPRMGFSCKEPFSGGRGSNTDDFTNKDYRVLDATDAWDTDGSYSMTMSPGPEDCKNKYSQSPKDGCSRSVRSNRSRSRSWSPPHGFRWDSGVNDRYRMRAGGLTQPCRDFAAGKCRRGSQCHFLHHDSQNYDDSWESRHRQAGTPRYSAPHESGESGDYSRTSGRSNETCINYAKGRCRMGASCKYVHNNNSDQFSKVSVDESTREREIDRRRTESSFEQGGRHATNHNGDIPCKFFAFGNCRNGKHCRFSHDRQACGSPNRRFRDDRSRSSQGGDQALDRPKLSDEFSPNGRLRDDRWGLDGSMADVDKVWDGSKQNDLVVVSDIAKLVEDKRNGIMGAPEPVFTAWPISDGWDHSLDKKRVHGESPFSSDMKEASWAAKNDSANVHTSQSVGTDIWPGNEKMSPDWNYGVGPSTHIKEEHGQSKQQVAPGQVFHQNVNALHSSSCHAVGQSQVAASIVPPRVRTIEGMQNQEVSAEKKYIVEPNIMDVNLSQVGSRNPPTQNLVSKEQLAQLTSLSASLAHIIGTGRQLPQLYATSISLDAKDTPFLSKTEGSGNPVSITFIKPDPAVGFQKQCDPICNSREPKNASANEVLPTFSPSKIIPKDTVEIPSLLSKLGKEFDDSKSAFLEEQFVQIEHSVQLQKGENVEVNKEDKVVAEEKQSSPCENKITEEYGPLENLDQNSGPDEAKKIKDVKGIRAFKFSLVEFVKELLKPTWKDGKITKEDYKAIVKKVTDKVTGTMQRVHIPQTQEKIDRYLSLSKPKLNKLIQAYVEKVQKS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2850 816 MobiDBLite consensus disorder prediction 167 202 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 236 256 - -
Ssu5g2850 816 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 815 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 291 337 - -
Ssu5g2850 816 Pfam RNA-binding, Nab2-type zinc finger 207 225 - -
Ssu5g2850 816 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Ssu5g2850 816 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 815 - -
Ssu5g2850 816 Gene3D - 138 240 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 97 117 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 40 62 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 419 439 - -
Ssu5g2850 816 SUPERFAMILY CCCH zinc finger 268 290 IPR036855 GO:0046872
Ssu5g2850 816 MobiDBLite consensus disorder prediction 233 262 - -
Ssu5g2850 816 Gene3D - 251 303 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 76 121 - -
Ssu5g2850 816 MobiDBLite consensus disorder prediction 419 435 - -
Ssu5g2850 816 ProSiteProfiles Zinc finger C3H1-type profile. 201 228 IPR000571 GO:0046872
Ssu5g2850 816 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 163 IPR000571 GO:0046872
Ssu5g2850 816 Pfam CCCH-type zinc finger 270 290 IPR041367 -
Ssu5g2850 816 ProSiteProfiles Zinc finger C3H1-type profile. 138 165 IPR000571 GO:0046872
Ssu5g2850 816 SMART c3hfinal6 202 227 IPR000571 GO:0046872
Ssu5g2850 816 SMART c3hfinal6 138 164 IPR000571 GO:0046872
Ssu5g2850 816 SMART c3hfinal6 265 291 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2850 Ssu-Chr5 74749890 74755142 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu5g2850 zf-CCCH 1.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2850 - K22909 gmx:100783856 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2850 5 74749890 74755142 Ssu5g2850 5 74749890 74755142 ECH