Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2849 ATGAACTCCCTAAACCCATTCTCACAACATTCCACAATGGCTTCTCTCCTCTACCTCTCTCTGTCCCTCATCCTAACCCTCTCCTCCGCCGCGCACCACCGCCACCACTCCCCGCCCGTCGCCGCCGCCGCTGCGTCGCCGGAGATTACCCAAGCCTGCGCCGCCACACGCTTCCCGCAGCAATGCGAAACCTCTCTCTCCCAATCCCGCAACCTCCCTCCCAACCCCACCCCTCTCCAGCTCCTCCAATCCGCCACCGCCGTCTCCTCCGACAACCTCGCCGCCGCGCAATCCATGGTCAAGTCACTCCTCGCCGCCTCCGGCGACAGCCGCAACCGCACCGTCGCCGCCACCACCTGCCTCGAAGTCCTCGCCGACTCGCAGCACCGCATTTCCCTCGCGAACGACGCGCTGCCGGGCGGCAAGACCAAGGACGCGCGCGCGTGGCTCAGCGCCGCGCTCGCGTACCAGTACGACTGCTGGAACAGCCTCAAGTACGCCAACGACACGCAGATGGTCGGCAAAACGATGTCGTTTATCGACGCCCTCTCCACGCTTTCCAGCAACGCGTTGAGCATGGCGTTCTCGTTCGACGCATTCGGAAACGACTCCGCGGCGTGGAAGCCCCCCGCGACGGAGCGCGACGGGTTCTGGGGGGCCGTCGGGTCCGGCGGACCCGGGTCCGCCGGAGGGGTGCCGTCGAATTTGACGCCGGACGTTACGGTGTGTAAGGGGGGAGGGGAGGGGTGTTACAAGACGGTGCAGGAGGCCGTTAACGAGGCGCCGGATAACGGCGGTGGGGCTAAGAGGTTTGTGATACACATAAAAGAAGGGGTTTATGAGGAGACCGTTAGGGTTCCGTTAGCGAAGAGGAATGTTGTGTTCTTGGGCGACGGCATAGGGAAGACGGTCATTACCGGCGACGCGAACGTGGGCCAACAAGGGATGACAACTTACAACTCTGCCACAGTCGCGGTTCTCGGCGATGGATTCATGGCAAAGGATCTCACGATCCAAAACACGGCGGGTCCTGACGCTCACCAAGCAGTGGCATTCAGATTAGACAGTGACCTTTCTGTGATTGAGAACTGCGAATTCTTAGGCAATCAAGACACTCTTTATGCTCACTCCCTGCGCCAATTTTACAAGTCATGCCGCATCGAGGGCAACGTGGACTTCATCTTTGGAAACGCTGCTGCAATTTTCCAAGACTGCCAAATCCTAGTTCGCCCCAGGCAAGTGAAGCCAGAGAAGGGCGAGAACAATGCTATCACGGCACATGGCAGGACAGACCCCGCACAAGCCACGGGCTTTGTTTTCCAGAACTGCTTGATTAATGGCACGGAGGATTACATGGCATTGTATCACAGCAAGCCTCAGGTGCACAAGAACTATTTGGGTAGGCCTTGGAAGGAGTTTTCTAGAACAGTTTTCATTAACTCATTCTTGGAGGCCCTTGTCACACCCCAGGGTTGGATGCCCTGGAGTGGGGACTTTGCCCTCAAGACACTTTACTATGGGGAGTTTGAGAACAGGGGACCTGGCTCTGATTTGTCTCAGAGGGTGCCCTGGAGTAGCAAGATCCCCGCTGAGCACTTGTCAACTTATTCAGTGCAGAATTTCATTCAAGGAAATGATTGGATTCCATCATCTGTTGGTAGCCCATCGTCGTGA 1674 0.5795 MNSLNPFSQHSTMASLLYLSLSLILTLSSAAHHRHHSPPVAAAAASPEITQACAATRFPQQCETSLSQSRNLPPNPTPLQLLQSATAVSSDNLAAAQSMVKSLLAASGDSRNRTVAATTCLEVLADSQHRISLANDALPGGKTKDARAWLSAALAYQYDCWNSLKYANDTQMVGKTMSFIDALSTLSSNALSMAFSFDAFGNDSAAWKPPATERDGFWGAVGSGGPGSAGGVPSNLTPDVTVCKGGGEGCYKTVQEAVNEAPDNGGGAKRFVIHIKEGVYEETVRVPLAKRNVVFLGDGIGKTVITGDANVGQQGMTTYNSATVAVLGDGFMAKDLTIQNTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNAAAIFQDCQILVRPRQVKPEKGENNAITAHGRTDPAQATGFVFQNCLINGTEDYMALYHSKPQVHKNYLGRPWKEFSRTVFINSFLEALVTPQGWMPWSGDFALKTLYYGEFENRGPGSDLSQRVPWSSKIPAEHLSTYSVQNFIQGNDWIPSSVGSPSS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2849 557 Pfam Plant invertase/pectin methylesterase inhibitor 49 193 IPR006501 GO:0004857
Ssu5g2849 557 CDD PMEI-like_3 52 193 - -
Ssu5g2849 557 Pfam Pectinesterase 239 545 IPR000070 GO:0030599|GO:0042545
Ssu5g2849 557 SUPERFAMILY Pectin lyase-like 238 550 IPR011050 -
Ssu5g2849 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 17 192 IPR006501 GO:0004857
Ssu5g2849 557 PANTHER PECTINESTERASE 21 551 - -
Ssu5g2849 557 SMART PMEI_2 44 193 IPR006501 GO:0004857
Ssu5g2849 557 Gene3D - 233 554 IPR012334 -
Ssu5g2849 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 196 IPR035513 -
Ssu5g2849 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 193 IPR035513 -
Ssu5g2849 557 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 21 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2849 Ssu-Chr5 74729056 74731578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2849 37 547 Carbohydrate Esterase AT5G09760 63.760 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2849 - - gmx:100819675 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2849 5 74729056 74731578 Ssu5g2849 5 74729056 74731578 ECH
Ssu5g2849 5 74729056 74731578 Ssu1g2579 1 70638249 70640735 PCT