Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2844 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTCGACTCGGTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGGTTTTGAGAGGTGTGGTTGTGATTATGATGAAATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGGTATGGGTTTAGCTGATGCTTCTTCCAACGTTTGTTCACAAGAGAAAATGAGCTTTGATGACTCATCCATCAGCTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGAGCAATCTCAAATGCTTGCATTTCACGTACTGATCAAGTATCTGAGGAGTTGGTTCTCTCTTTAGGCAAAGCAGTTTCTGAAACAAAAGTCTCTTTGGATGAAGTGAAAGGGTGTCCCCAAGATGAAGCAGATGCAAATTTTCAAGGGAAAGTGCATGAGTTCTCTTCTACATCTCAGGAGCACAGACACAGAGAAGCTGATTCACAAGAAGAATTTCAGGATTTTGATATGggtaaaaggaaaaggaaaaactgGTGGAAGCGTTTTGTGAACATCAGGAAAGGTGGTGAAGGAAATGTTAGATCAAAATTCAATGCAGGGACAAATAAAACTAGAAGAATAAAGGTAAGGCAGAATAAAAAGTGGTGGCTGGAGTTCAGTGGCCTATACATTGGACAAGATGTTAGAGCACACAAAGGCCTAATCTGGACAATGAAATTTAGTCCCACTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTGCGCATATGGCGTGTTTTATCACTGGATAAGTCCGGTATTTGTTTCACCACAGAAGACAGTACTTCTAATAGCAAAGTGGAATGTGACAACTCTTCTCCTTGGAAGAAACGCTCAAGCCAACCCTTCATTTTCCTTCCAAATagtatttttcaatttgaggAATCACCACTGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAGACTGTTCGCTTGTGGCAAATTGGTTGTAATCAGTGTCTAAATGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCctattgataaaaataacttcATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTGTAAGTTACCAGCAAGATGGTAAAGGATTTGTAGTTGGTTCTGTTACAGGCACATGTCGATTTTTTGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCACAGATAGATGTCCATGGAAAGAAGAAAGCATCAGGCAACAAGATTACCAGCATTCAGTTCTCCCAAAAACACTCTCAGAGAATTATGATCACATCAGAAGATTCCAAAATTCGTATATTTGATGGCTTTGAGCTTGTTCAGAAATACAAAGGTCTTCCTAAGTCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTggaaaacatataatttcagTTGGAGAGGACTCCCGTGTTTACATTTGGAACTTCGATGACTTGGGAAATGCTTCTTCTAAACAGACAAAATCCGAACACGCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGGCATGAAAACAGATCAAAGTGGCTCTAGCAGTAATTTTTCCCACCATTCTTCAGAAATGCAAACCCAACTAGAGGTTGCTCCTGAGGCTAGAGATCCAGAACGTTTTTCTCTTGGTAATTGGTTTGCCATTGATGGCACGTGCCGAGGTTCTATGACATGGCCTGAGGATAAACTTCCACGCTGGGATTTACTTATAGCAGAAGATGAATTAGATCAGCAGCAGTTATGTCACAAAGTTACCTTCCGTGACAGAAGTGTATCAGAAACATGGGGGCTATCAATTGTGGTGGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTTAGGCTTTAA 2028 0.4009 MLGSDDGDIDVFFDSVDSLSAQDSVLAKEEFGFERCGCDYDEIWVKEPVSVKERRERFLQGMGLADASSNVCSQEKMSFDDSSISLGLERIRECSGAISNACISRTDQVSEELVLSLGKAVSETKVSLDEVKGCPQDEADANFQGKVHEFSSTSQEHRHREADSQEEFQDFDMGKRKRKNWWKRFVNIRKGGEGNVRSKFNAGTNKTRRIKVRQNKKWWLEFSGLYIGQDVRAHKGLIWTMKFSPTGQYLASGGEDGVVRIWRVLSLDKSGICFTTEDSTSNSKVECDNSSPWKKRSSQPFIFLPNSIFQFEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFNPIDKNNFISGSIDGKVRIWGIREERVIDWADIRDVISAVSYQQDGKGFVVGSVTGTCRFFVASGKYFQLEAQIDVHGKKKASGNKITSIQFSQKHSQRIMITSEDSKIRIFDGFELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSRVYIWNFDDLGNASSKQTKSEHACEYFFSKGVTVAIPWSGMKTDQSGSSSNFSHHSSEMQTQLEVAPEARDPERFSLGNWFAIDGTCRGSMTWPEDKLPRWDLLIAEDELDQQQLCHKVTFRDRSVSETWGLSIVVAGCDGTIKTFHNFGLPVRL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2844 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 401 IPR001680 GO:0005515
Ssu5g2844 675 PANTHER WD REPEAT DOMAIN 44 1 675 IPR040324 -
Ssu5g2844 675 SUPERFAMILY WD40 repeat-like 230 665 IPR036322 GO:0005515
Ssu5g2844 675 SMART WD40_4 312 350 IPR001680 GO:0005515
Ssu5g2844 675 SMART WD40_4 353 392 IPR001680 GO:0005515
Ssu5g2844 675 SMART WD40_4 224 263 IPR001680 GO:0005515
Ssu5g2844 675 SMART WD40_4 394 433 IPR001680 GO:0005515
Ssu5g2844 675 SMART WD40_4 485 526 IPR001680 GO:0005515
Ssu5g2844 675 SMART WD40_4 444 484 IPR001680 GO:0005515
Ssu5g2844 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 264 IPR001680 GO:0005515
Ssu5g2844 675 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Ssu5g2844 675 Pfam WD domain, G-beta repeat 355 391 IPR001680 GO:0005515
Ssu5g2844 675 Pfam WD domain, G-beta repeat 314 349 IPR001680 GO:0005515
Ssu5g2844 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 359 IPR001680 GO:0005515
Ssu5g2844 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 394 - -
Ssu5g2844 675 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Ssu5g2844 675 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Ssu5g2844 675 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Ssu5g2844 675 Gene3D - 224 557 IPR015943 GO:0005515
Ssu5g2844 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 264 - -
Ssu5g2844 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 351 - -
Ssu5g2844 675 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2844 Ssu-Chr5 74587876 74591787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2844 316 523 U-box Gene Family AT2G33340 26.147 3.11e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2844 K20241 - gmx:100819135 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2844 5 74587876 74591787 Ssu5g2844 5 74587876 74591787 ECH
Ssu5g2844 5 74587876 74591787 Ssu1g2583 1 70723176 70726685 PCT