Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2843 ATGAAGCTAGTGCGTCTGGGAGCGGTTAAGGTGTTCTCGAACCTTCTTTCGGCTTCGAGCTTGAGCGTGTCCGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTCGGAGATTTGCGAGGATTCGGCGTGCGTGGCGGCGATAGTGAACAGGGTTCTGAAAGTGTCCAGCGTGGCGATGGAACACGCCGTTACGACGCTGTGGAGTGTGTGTTATCTGTTTCGGGATCAGAAGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACGAAGATTCTGCTTCTGATGCAGAGCAATTGCACGCCCCAAGTGCGCCAAATGTCTGCGGATTTGCTTAAGATCTTTCGGGTTAATTCTAAGTCGTGTCTTTCTTCTTATGACACCAAGACCACTCATATTATGCCCTTTTGA 435 0.5195 MKLVRLGAVKVFSNLLSASSLSVSVTEKVLKLVETVSSTKEGRSEICEDSACVAAIVNRVLKVSSVAMEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2843 144 SUPERFAMILY ARM repeat 3 127 IPR016024 -
Ssu5g2843 144 PANTHER WDSAM1 PROTEIN 2 144 IPR045185 GO:0061630
Ssu5g2843 144 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 2 144 - -
Ssu5g2843 144 Gene3D - 2 123 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2843 Ssu-Chr5 74544192 74544626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2843 1 144 U-box Gene Family AT5G09800 62.500 9.88e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2843 - - gmx:100781196 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2843 5 74544192 74544626 Ssu1g2584 1 70763279 70764514 PCT