Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2842 ATGAAATCCCCTGTGAGCCTCTGCACCGGTGTAACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGACACAACACGTGTCCCGCCACCATGCAGGTTCTCCAAAGCAAAGAGTTCGTTCCTAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCCGACTCGGTCCGTCACCGAGTCGACTCGACCAAGTCGGTCCTCTCCAAGGACCAAGTCCTCGTCGCTATCTCCGAGTTGGAGACTCGCAGCGAGAACCGGTTCGACTCGCTCGCGAAAATCGCGCGGTTCGCGCAGGATTCCGAAGAGAATCGCGATTTTCTCGTGAGAACGGAATGCTTCGTGCCGGTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTCGTCACGGCGTTGGATTTAGTTATCAGCAAAATGGAAGATCGCGAGGGGCTGAAAAAATTGATACTAAAGAGGCAGAGTGACGGACAAAAACAGAGCATAGATTCCCTGCTTCTTGTTCTGCAACAAGGAAGCCGTGGCTCAAAAATCGCATCCGCTAGGGTTTTGAAATCCGTCGCGGTGGACGCGGAATCGAAGCTGTTGATAGCGAAAAGGAAGGTTTAG 630 0.5397 MKSPVSLCTGVTYDRSSIQRWLDNGHNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVRHRVDSTKSVLSKDQVLVAISELETRSENRFDSLAKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLEQVVTALDLVISKMEDREGLKKLILKRQSDGQKQSIDSLLLVLQQGSRGSKIASARVLKSVAVDAESKLLIAKRKV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2842 209 Pfam U-box domain 1 56 IPR003613 GO:0004842|GO:0016567
Ssu5g2842 209 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 1 207 - -
Ssu5g2842 209 CDD RING-Ubox_PUB 1 34 IPR045210 -
Ssu5g2842 209 PANTHER WDSAM1 PROTEIN 1 207 IPR045185 GO:0061630
Ssu5g2842 209 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Ssu5g2842 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Ssu5g2842 209 SUPERFAMILY RING/U-box 1 56 - -
Ssu5g2842 209 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2842 Ssu-Chr5 74543461 74544090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2842 1 207 U-box Gene Family AT3G18710 47.685 6.00e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2842 - - gmx:100799627 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2842 5 74543461 74544090 Ssu5g2842 5 74543461 74544090 ECH