Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2839 ATGGGTTTAAACTATCTCCACGGTCACAACCCACCAATTATACATAGGGACCTGAAAtgtgataatatatttatcaacgGTCACCAAGGAGAAGTTAAAATTGGAGATCTGGGGTTGGCAACTTTTTTGGAGCGAAGTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCACCTGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCCGAGTATCCTTACAGTGAATGCAGAAATTCAGCCCAGATATACAAGAAAGTTTCATCTGGTATAAAACCAGTTGCTCTTTCCAAAGTGATAGATCCAgaaatgaaatcatttattgaGAAATGTCTAGGCCCAGCATCTCAAAGATTGTCAGCCAAGGAGCTTCTGTTGGACCCCTTTCTTCAAATGAATGGTTCAACAAAGAATGGTTCTTTTCCATTGCCGGATATTGTTCTTCCCAAATTGGGAGCCTTTGAAAGCCGTTGTATGGTGTCAGAAGGTCCTGCTAGTGCACGTAATGGAGACATTTCTATGGATCTTGGTGACACCAGCGAGCTTCCTGTGATCActgtatttaataaatctacTGATGATGCATCAAGTTCTACATGTGTTGAGATAAGGAGGCAGAAGAGAGGTGATATATTCTTTCTAAAAGGTGAAGAGAATGATGAGAATTCTGTATCATTAGTTCTGCGGATAGCTGATCACAGTGGACGAGCAAGAAATATCCATTTCATATTCTACCTTGACAGTGATACTGCTGTCTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTTACTGATCAGAATGTTAAATTCATAGCTGAGTTAATAGATTTGTTATTGATGAATTTGGTTCTTGATTGGAAACCTTGTGTAGCAATTGATCATTTGGTTTCTCCAAATAATAAAAGGACTCATTTGAGTCAACAGAGAGAGTTGGAGTTGGCAAAATGCAAAGGAAGCTCGAAACATTCGACTGAAATTGTGGCTGAAGATTTAGGTCCCTCGACCACATCTGCAAGATTAGCTACAAAAGAAAACCTTGATAATATGGATTTTGATGAGGCTTTATCTCATGAGTGCACCGGTCTTCAAAAATCAACCAAGGCAGATGATTTGTGCTCTGAGATGTCATATGCTTCTGCAACAACTGACTTCAATGATAATAAGTTTTCTATGCTTTCATTCATGTCTGCTGAATCAGGATTTGATAGAGGGAGTCAATCCTCATTTGCATCTGAAAATGGGGTATCACCTGGTTTTAAGAGCAAGTTTTCAGACATGGAAAGCTTCTCTAGTCATCCCAACATTATTTCCTCCTCGTCTGGACCTGAGAGTGAGTTGAAAATAGAGTTAGAAATGATTGAACAAAAGTATCAAGAGGCAATTAATGATTTATACAAAAGAAGATACCAGGCCATCTTGGAGATTAGAAGGAGAATGTCAGAGAAGATGGTATCATAG 1509 0.3784 MGLNYLHGHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATFLERSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVIDPEMKSFIEKCLGPASQRLSAKELLLDPFLQMNGSTKNGSFPLPDIVLPKLGAFESRCMVSEGPASARNGDISMDLGDTSELPVITVFNKSTDDASSSTCVEIRRQKRGDIFFLKGEENDENSVSLVLRIADHSGRARNIHFIFYLDSDTAVSVSSEMVEQLELTDQNVKFIAELIDLLLMNLVLDWKPCVAIDHLVSPNNKRTHLSQQRELELAKCKGSSKHSTEIVAEDLGPSTTSARLATKENLDNMDFDEALSHECTGLQKSTKADDLCSEMSYASATTDFNDNKFSMLSFMSAESGFDRGSQSSFASENGVSPGFKSKFSDMESFSSHPNIISSSSGPESELKIELEMIEQKYQEAINDLYKRRYQAILEIRRRMSEKMVS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2839 502 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 1 501 - -
Ssu5g2839 502 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 501 - -
Ssu5g2839 502 Coils Coil 460 480 - -
Ssu5g2839 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 13 25 IPR008271 GO:0004672|GO:0006468
Ssu5g2839 502 SMART serkin_6 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2839 502 Pfam Protein kinase domain 2 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2839 502 Gene3D - 238 326 - -
Ssu5g2839 502 SUPERFAMILY Protein kinase-like (PK-like) 2 147 IPR011009 -
Ssu5g2839 502 Gene3D Transferase(Phosphotransferase) domain 1 1 153 - -
Ssu5g2839 502 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2839 Ssu-Chr5 74481098 74482987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2839 2 320 MAP Kinase Kinase Kinase AT1G49160 69.279 1.74e-165 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu5g2839 Pkinase 5.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2839 K08867 - gmx:121175054 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2839 5 74481098 74482987 Ssu5g2839 5 74481098 74482987 ECH
Ssu5g2839 5 74481098 74482987 Ssu1g2586 1 70801394 70802611 PCT