Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu5g2838 | ATGGAGTTCCTGGACGAGGACGCGAGACCGAGGTTCGTGTTTCAGTCCGGTGCAGTTGCGAGCACCGAGCCACCGCACCCGAATCACCACACACCAACCAAGCCATTCCTCCTCGTTAcagtttctctctcttccctgttcctcactctctctctcttcttcctccAATCGGAACCCTTCAAATCGCTCCTCTTCTGGCTCGCGCTCTCTCTCTTCCTCGGCCCCTTCGCCCCTCCCTCCCTCACCGGCGGCGACATCCGCGTCGGCCGCGGCGACGCCGTCCGGTTCCCCGATCCGGATCCGGAACCCGACGACGATGCCAGTAGGAGGCCTCCGCAGCGGCGATCCAAACAGCGGAGACCGGAGGAGGTCCCCGCCGTCGTCCCGGTGGTTGCGGCGGAGAAGAGAGGAGGCGGCGGCGGCGGTGGAGAGGAGAAGCGCGTGGCGGTGGTGGAGGAGGAGAGGGAGTGGAGCGAGGAGGACGTGGAGGTGCTGAAGAAGCAGATGGCGAAGAATCCGGTGGGGAAGCCGGGGCGGTGGGAGGCGATAGCGGCGGCGTTCGGGGGGAGGCACGGGGTGGAGAGTGTGATAAAGAAGGCGAAGGAGTTGGGGGAGAAGAGGGTGGATGATTCGGAGTCGTATGCGCTGTTTTTGAAGAAGAGGAAGGCGTTGGACAAGAGGGTTGTGGAGAATGACGGGGGTGAGGAGAGTGTGACGTTGGAGAAAGTCGTTGAGAGCGTTTGGAGTTCTGGTGAGGATGTTGCGTTGCTGAATGCTTTGAAAGCGTTTCCTAAGGATGTTTCCATGAGGTGGGAGAAGGTTGCCGCTGCGGTTCCCGGGAGATCCAAGGCAGCTTGCATGAAAAGATTCGCCGAATTGAAGAAAGGGTTTCGGAGTGCAAAAGCTGCAGCTGAGTGA | 918 | 0.5806 | MEFLDEDARPRFVFQSGAVASTEPPHPNHHTPTKPFLLVTVSLSSLFLTLSLFFLQSEPFKSLLFWLALSLFLGPFAPPSLTGGDIRVGRGDAVRFPDPDPEPDDDASRRPPQRRSKQRRPEEVPAVVPVVAAEKRGGGGGGGEEKRVAVVEEEREWSEEDVEVLKKQMAKNPVGKPGRWEAIAAAFGGRHGVESVIKKAKELGEKRVDDSESYALFLKKRKALDKRVVENDGGEESVTLEKVVESVWSSGEDVALLNALKAFPKDVSMRWEKVAAAVPGRSKAACMKRFAELKKGFRSAKAAAE | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu5g2838 | 305 | SUPERFAMILY | Homeodomain-like | 244 | 294 | IPR009057 | - | |
| Ssu5g2838 | 305 | MobiDBLite | consensus disorder prediction | 88 | 146 | - | - | |
| Ssu5g2838 | 305 | SUPERFAMILY | Homeodomain-like | 155 | 194 | IPR009057 | - | |
| Ssu5g2838 | 305 | ProSiteProfiles | Myb-like domain profile. | 240 | 294 | IPR001005 | - | |
| Ssu5g2838 | 305 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 | 1 | 305 | IPR044634 | GO:0006450|GO:0030544|GO:0043022|GO:0051083 | |
| Ssu5g2838 | 305 | Gene3D | - | 242 | 305 | - | - | |
| Ssu5g2838 | 305 | MobiDBLite | consensus disorder prediction | 91 | 122 | - | - | |
| Ssu5g2838 | 305 | PANTHER | TRANSCRIPTION FACTOR MAMYB | 1 | 305 | - | - | |
| Ssu5g2838 | 305 | ProSiteProfiles | SANT domain profile. | 243 | 298 | IPR017884 | - | |
| Ssu5g2838 | 305 | Coils | Coil | 148 | 168 | - | - | |
| Ssu5g2838 | 305 | SMART | sant | 244 | 296 | IPR001005 | - | |
| Ssu5g2838 | 305 | SMART | sant | 153 | 206 | IPR001005 | - | |
| Ssu5g2838 | 305 | CDD | SANT | 248 | 294 | IPR001005 | - | |
| Ssu5g2838 | 305 | Gene3D | - | 151 | 209 | - | - | |
| Ssu5g2838 | 305 | Pfam | Myb-like DNA-binding domain | 247 | 293 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu5g2838 | Ssu-Chr5 | 74478557 | 74479474 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Ssu5g2838 | Myb_DNA-binding | 1.1e-05 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu5g2838 | - | - | gmx:100780658 | 397.512 |