Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2837 ATGAATGCGATGGATTATGAGCAATTTGATTACTCGTTTAGCCCTCCTTACATGAATCAACTCGATGAGTGTAGCTCAGAAAATGCATTTCCATTTCAAACAGAAGATCTCTTATCACCAAACACCATCCTGGATGAAATGTTTGATCAAGAGTCCATAGAAAGATTGCTGCAGCAAGATGCAAACAACCAGGACTTTGGTTTCATGGATCATAATGATCCACTAGAAACTGAATTGTGTCAAGGATTTACCCCTGATGCTGAGGAAAATGTGCATGTTTCAATGGAAGAAGGGGATTCTTATTTGAAGGGAATCCAAGCAGAGCTAATGGAAGAGACCAGCTTAGCTGATCTCTTGCTAACAGGAGCTGAAGCCGTTGAAGCACAGAACTGGGCCCTTGCTTCAGACATAATTGAGAAACTTAACAATGCCTCATCTTTAGAAAATGGTGATGGTTTATTGAACAGGTTGGCTCTTTTCTTTACTCAGGGTCTGTATTATAAAAGTACAAATGCCCCTGAATTGCAGTGTGGTGCTGTTTCTACACACACAAATGCTTTCTGTGTGTTTCAGGTTCTCCAAGAACTCTCCCCCTATGTGAAATTTGCTCATTTCACTGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGCTGAAGATGTTCACATCATtgattttgacatcatggaggGGATTCAGTGGCCACCCTTGATGGTTGACCTAGCAATGAGGAAAAGTACTACTTCCCTTAGAGTCACAGCCATCACAGTGGACCAGAGAGGTGCTGCTTCTGTTCAACAAACAGGAAGAAGGCTCAAAGAGTTTGCAGCTTCTATCAACTTTCCATTCATGTTTGATCAGATAATGATGGCAAGGGAAGAGGATTTTCAAGGAATTGAACTTGGTCAAACACTCATAGTCAACTGCATGATACACCAGTGGATGCCTAATAGGAGCTTCCCATTGGTCAAAACTTTCTTGGATGGGGTGAGCAAATTATCCCCAAGGCTTGTCGTTTTAGTGGAAGaagaactatttaatttttctaggcTCAAATCCATGTCCTTTGTGGAGTTCTTCTGTGAAGCTTTGCATCACTACACTGCACTTTGTGATTCACTTGCTAGTAGTCTATGGGGTAGCCACAAGATGGAGTTGACCCTGATAGAAAAAGAGGTTCTGGGGCTCAGAATCTTAGACAGTGTGAGGCAGTTTCCTTgtgagagaaaggagagaatgGTGTGGGAGGAAGGGTTTTATTCCTTGAAAGGGTTTAAACGTGTTCCTATGAGTACATGTAATGTTTCACAAGCCAAGTTCTTGGTAAGCCTGTTTGGTGGAGGGTATTGGGTGCAATTAGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCGTCAATCTGGGTACCAACGGCTTATCCGAGTGACAGGGTCAAATAG 1455 0.4117 MNAMDYEQFDYSFSPPYMNQLDECSSENAFPFQTEDLLSPNTILDEMFDQESIERLLQQDANNQDFGFMDHNDPLETELCQGFTPDAEENVHVSMEEGDSYLKGIQAELMEETSLADLLLTGAEAVEAQNWALASDIIEKLNNASSLENGDGLLNRLALFFTQGLYYKSTNAPELQCGAVSTHTNAFCVFQVLQELSPYVKFAHFTANQAILEATEGAEDVHIIDFDIMEGIQWPPLMVDLAMRKSTTSLRVTAITVDQRGAASVQQTGRRLKEFAASINFPFMFDQIMMAREEDFQGIELGQTLIVNCMIHQWMPNRSFPLVKTFLDGVSKLSPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYTALCDSLASSLWGSHKMELTLIEKEVLGLRILDSVRQFPCERKERMVWEEGFYSLKGFKRVPMSTCNVSQAKFLVSLFGGGYWVQLEKGRLALCWKSRPLTVASIWVPTAYPSDRVK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2837 484 ProSiteProfiles GRAS family profile. 106 474 IPR005202 -
Ssu5g2837 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 474 IPR005202 -
Ssu5g2837 484 Pfam GRAS domain family 116 473 IPR005202 -
Ssu5g2837 484 PANTHER OS12G0162700 PROTEIN 5 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2837 Ssu-Chr5 74471870 74473324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2837 188 473 GRAS Transcription Factor Family AT1G55580 36.538 5.57e-45 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu5g2837 GRAS 1.4e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2837 - - gmx:100804613 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2837 5 74471870 74473324 Ssu5g2837 5 74471870 74473324 ECH