Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2835 ATGTATGCTTCTACATCCTTTACTTCGCAACTGGTCCATGACCTTCTCGTGGACTCTAACTCAAGAAAGCTGCTCCTTCAAAACCCACTTCACCAATCAATCAACTCAGCCAACTCCCCAGAGTCCATCAACAACTACAACTCAACAGACTCATATTTCAAAGGCCGTGACTTCGATGCAAATGTTGTCATGATACTCTCAGTCCTCTTGTGTGCTGTTATTTGCTCACTCGGGTTAAACTCCATCATAAAGTGTGTCTTAAGGTGTTCAAACATAGTCATCAATGACCCTTCAAGTGTGAGCTATAACCCTTCACCGCGACTGGCCAACACAGGAGTCAAGAAAAAGGCTCTCAAGACTTTTCCTACTGTAAGCTACTCAACAGAGCTAAAACTTCCGGGTTTGGACACAGAGTGTGTGATATGCCTCTCAGAGTTTGCCAATGGTGATAAGGTGCGCATTCTGCCAAAGTGCAACCATGGTTTCCATGTTCGCTGCATTGACAAGTGGCTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGATCCCAACAACCAGTGGCACCAGTGCCAGAAACCATTATAAGGATCCAACCACTAGAACCAGAAGGTTTCGAGCGTAACTATAGGGAAGTATACTAG 675 0.4489 MYASTSFTSQLVHDLLVDSNSRKLLLQNPLHQSINSANSPESINNYNSTDSYFKGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVINDPSSVSYNPSPRLANTGVKKKALKTFPTVSYSTELKLPGLDTECVICLSEFANGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQQPVAPVPETIIRIQPLEPEGFERNYREVY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2835 224 CDD RING-H2_PA-TM-RING 138 181 - -
Ssu5g2835 224 Pfam Ring finger domain 138 181 IPR001841 -
Ssu5g2835 224 SUPERFAMILY RING/U-box 117 186 - -
Ssu5g2835 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
Ssu5g2835 224 SMART ring_2 139 180 IPR001841 -
Ssu5g2835 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 185 IPR013083 -
Ssu5g2835 224 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Ssu5g2835 224 PANTHER RING-H2 FINGER PROTEIN ATL78 1 223 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2835 Ssu-Chr5 74435972 74436646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2835 37 185 C3H Transcription Factor Family AT3G10910 47.771 1.84e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2835 K19040 - gmx:100780127 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2835 5 74435972 74436646 Ssu1g2592 1 70847609 70848295 PCT