Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2834 ATGTCTGCCATGAACTCTAGTGTCTTGGCCTGTAACTACGCCAGATCAGGATGCTCCGACCTCAATGCGAAGCTCACTTCCATGCCTTCGGTTGCATCACCACCTGTCTCTGGTTACAAGTTGCCTATGATCAAGGCACAGCATGCAAGAGTCTCCGAATCTAAATCAAACGAAGGAAGGAGAAGTGCCCTTGTTTGCTTAGCAGCTACCCTTTTCACTGCTGCAGCTGCTGCTTCCAATTCTCCTGCCAACGCTGGAATCATTGGAGAATACCTTGAAAAGAGCAAGGCCAACAAGGAACTGAATGACAAGAAAAGGTTAGCTACAAGTGGGGCTAATTTTGCAAGAGCATACACAGTGGAATTTGGCTCCTGCAAGTTCCCTGAAAACTTCACTGGTTGCCAAGATCTAGCTAAGCAAAAGAAAGTGCCATTTATTTCTGATGATTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 513 0.4522 MSAMNSSVLACNYARSGCSDLNAKLTSMPSVASPPVSGYKLPMIKAQHARVSESKSNEGRRSALVCLAATLFTAAAAASNSPANAGIIGEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2834 170 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 170 IPR008796 GO:0009522|GO:0015979
Ssu5g2834 170 Gene3D - 86 170 IPR044907 -
Ssu5g2834 170 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 170 - -
Ssu5g2834 170 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 43 170 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2834 Ssu-Chr5 74425052 74426046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2834 1 141 Calmodulin-binding Proteins AT5G64040 62.500 1.89e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2834 K02701 - csv:101204396 258.84