Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2824 ATGGAAAACTGCACCCCCTTTGTCCTTCGTGACCTTCTGCAAGATCTTTCTCCTCTCTTTCCTTGGGATCACTGCGAGCTTGGACATATATGGTATTGCTCTTACTTACACTTCTGCTACTTTGGCTGCTGCTACCACAAACTGCCTTCCAGTCATCACCTTTTCTTGGCGCTCCTACTCAGGattgaagttttgaaaataaagacaGCCCCTGGGGTTGCTAAGTTGGTTGGTGTAGTGGCATGCTTGACTGGGGCAGCAATCCTTGCTTTCTATAAAGGTCCTCATTTGGAACTTTTAAACCATTATCACCTTTTAGGGTACCACAAAAGCCAACAACATCTGGGTCATGTTGCATCTGGGTCATGGATAAAGGGTTGCTTCCTCATGCTCCTCTCCAACACCTTTTGGGGAATGTGGCTTGTAGCTACAGGCTACCCTTCAAAGCTGCTCCTCACAACTCTTCAGTGTTTCTTAAGCTCAGTTCAGTCTTTGGCTGTTGCCTTGGCCGTAGAAAGAGACATTGAGCAATGGAAGTTGGGGTGGAATGTCAGACTACTCGCCGTTGTGTATTGTGTAATCCTCTAA 588 0.4541 MENCTPFVLRDLLQDLSPLFPWDHCELGHIWYCSYLHFCYFGCCYHKLPSSHHLFLALLLRIEVLKIKTAPGVAKLVGVVACLTGAAILAFYKGPHLELLNHYHLLGYHKSQQHLGHVASGSWIKGCFLMLLSNTFWGMWLVATGYPSKLLLTTLQCFLSSVQSLAVALAVERDIEQWKLGWNVRLLAVVYCVIL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2824 195 PANTHER WAT1-RELATED PROTEIN 44 193 - -
Ssu5g2824 195 PANTHER WAT1-RELATED PROTEIN 44 193 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2824 Ssu-Chr5 74339248 74342228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2824 54 193 Nodulin-like Gene Family AT5G64700 53.691 6.90e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2824 - - ccaj:109799350 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2824 5 74339248 74342228 Ssu5g2824 5 74339248 74342228 ECH
Ssu5g2824 5 74339248 74342228 Ssu1g2599 1 70972917 70976601 PCT