Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2823 ATGGATTCGGAGGATTTCCGATCCATATTGGAGAGCGCGGGCGTCGACGTGTGGGTGTTGATGGACGCCGCCATCTCGGTGGCCTCCGTCGACTGCGGCGACGAATTGAAGCGCCGGAGAGACGGAATCGTGGAGCGCCTTTACGCGGCGAGTTCGGCGCCGCCGCCGTGCCGAAACTGCGAGGCCGGCGGCGGAGAAATCAGGACGCAGAGCAATCCCTCCGCGGAGGAGGAAAAGGATCCTCACGGAGGCTTGTTCGACGACGAGCAGAAGAAGATTCTAGAGATTAAGGAGCAACTCGAAGACCCTCACCAGTCCGAATATTCGTTGGTGGAGTTGCTACAGAATCTAGCGGACATGGATATTACATTCCAAGCGTTAgaaGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTTAGGAGATTGGTGAAATTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGACACCGGGAGAAGCAGCTGATGAGGATTCGCCTCAGCAGAAAATCCTACAAAATGGGCATCGTCAGATTCCCGATTTTGCACACTCGCCAAATCCACACAATGCGAGTTTTGGGTCAGAGCGCAACAATATGGAAGCACAACTAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCATCGCCATCAGTCACTGCTGCTGCTCCTGCTCCTCAAAACGTACGGATATCAATTTATAAACTTTCTGGAGTCTCTGACCTTCTAAATGTGGCTACTAAAATTTGGAGGTTGTGGCTTCAAAAATCAAACACTTAA 828 0.506 MDSEDFRSILESAGVDVWVLMDAAISVASVDCGDELKRRRDGIVERLYAASSAPPPCRNCEAGGGEIRTQSNPSAEEEKDPHGGLFDDEQKKILEIKEQLEDPHQSEYSLVELLQNLADMDITFQALEETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVKLKTPGEAADEDSPQQKILQNGHRQIPDFAHSPNPHNASFGSERNNMEAQLKPKAIPRKEAPPKPSPSVTAAAPAPQNVRISIYKLSGVSDLLNVATKIWRLWLQKSNT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2823 275 Pfam TFIIS helical bundle-like domain 113 162 IPR017923 -
Ssu5g2823 275 ProSiteProfiles TFIIS N-terminal domain profile. 88 165 IPR017923 -
Ssu5g2823 275 CDD TFIIS_I 90 163 - -
Ssu5g2823 275 SMART TFS2_5 93 164 IPR003617 GO:0005634
Ssu5g2823 275 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 86 175 IPR035441 -
Ssu5g2823 275 Coils Coil 110 130 - -
Ssu5g2823 275 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 243 IPR044790 -
Ssu5g2823 275 MobiDBLite consensus disorder prediction 52 86 - -
Ssu5g2823 275 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 91 172 IPR035441 -
Ssu5g2823 275 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2823 Ssu-Chr5 74317809 74319271 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu5g2823 Med26 6.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2823 - - gmx:100796457 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2823 5 74317809 74319271 Ssu5g2823 5 74317809 74319271 ECH
Ssu5g2823 5 74317809 74319271 Ssu1g2603 1 71042976 71044840 PCT