Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2822 ATGGCAAAATCTCCCCAAACTGAACTCCCTCTCAAAGCTTTTGGTTGGGCTGCTACAGACACTTCTGGCATCCTTTCCCCCTTTCATTTTTCCAGaagGGAAAACGGCGATGACGACGTCACTCTCCAGATTCTCTATTGCGGGGTTTGCCATTCTGATCTCCACACTGTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCTGGGCATGAAATTGTTGGTGTAGTGACAAAAACTGGAAACAATGTGAAAAATTTCCAAGTGGGTGACAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGTAAGGAATGTGAATGTTGCCAACAGGATCTGGAGAGTTACTGTCCCCGACCTGTGTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCCAAGGTGGTTATTCTAATGTCGTGGTAGTTCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTACCCCTTGATGCTGGTGCTCCACTGCTGTGTGCTGGGATCACTGTGTATAGCCCAATGAAATATTATGGGATGACTGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGCCATGTTGCAATCAAATTTGCTAAGGCATTTGGGCTGAAAGTTACTGTCATTAGTGGCTCTCCAAACAAGGAAGCTGAGGCCATTGACAGGCTTGGGGCTGATTCTTTCCTTGTTTCCTCAGACCCTGCAAAAATGAAGGCAGCTATGGGAACCATGGACTATATCATAGACACAATTTCCGCTGTTCATTCCCTGATTCCACTGCTTGGTCTGCTGAAGCTGAATGGGAAGCTGGTTACTGTAGGGTTGCCTAGTAAGCCCCTTGAGCTGCCTGTCTTTCCGTTAGTTGCAGGACGGAAGCTTATAGGGGGGAGCAACTTTGGAGGGATCAAGGAAACTCAGGAAATGCTTGATTTCTGCGGAAAACACAACATAACTGCAGATATTGAGCTGATTAAGATGGATCAAATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCGAACTCTTTCTCAATTTTGTAG 1083 0.4617 MAKSPQTELPLKAFGWAATDTSGILSPFHFSRRENGDDDVTLQILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIVGVVTKTGNNVKNFQVGDKVGVGVIVESCKECECCQQDLESYCPRPVFTYNSPYYDGTRTQGGYSNVVVVHQRYVLRFPENLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFAKAFGLKVTVISGSPNKEAEAIDRLGADSFLVSSDPAKMKAAMGTMDYIIDTISAVHSLIPLLGLLKLNGKLVTVGLPSKPLELPVFPLVAGRKLIGGSNFGGIKETQEMLDFCGKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFSIL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2822 360 Gene3D - 167 323 - -
Ssu5g2822 360 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Ssu5g2822 360 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 357 - -
Ssu5g2822 360 PANTHER ALDEHYDE REDUCTASE 12 357 - -
Ssu5g2822 360 CDD CAD1 14 352 - -
Ssu5g2822 360 SUPERFAMILY GroES-like 20 185 IPR011032 -
Ssu5g2822 360 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Ssu5g2822 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Ssu5g2822 360 Gene3D - 16 353 - -
Ssu5g2822 360 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Ssu5g2822 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2822 Ssu-Chr5 74273190 74276363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2822 12 357 Monolignol Biosynthesis Gene Families AT2G21730 71.264 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2822 K00083 - gmx:100819684 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2822 5 74273190 74276363 Ssu5g2822 5 74273190 74276363 ECH