Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2819 ATGAGCGTGGAAGATCTTCCGAGGAAAGAGGTAAACGTGCTGAAGGGTCACGAGGGTGCCGTGTTGGCCGCGAGGTTCAACGGCGACGGCAATTATTGTCTAAGTTGCGGCAAAGATCGTACCATACGCCTCTGGAATCCCCACCGTGGCATTCACATCAAGACCTATAAATCCCATGGCCGTGAAGTCCGCGATGTCCACGTCACACcGGACAACTCCAAGTTATGTTCCTGTGGTGGAGATCGACAGGTATTTTATTGGGATGTTGCAACTGGACGTGTAATTAGGAAATTTCGTGGCCATGATGGTGAGGTAAATGGTGTCAAATTCAATGAGTATTCTTCTGTTGTTGTCTCAGCTGGCTATGATCAATCACTGCGTGCTTGGGACTGCAGATCACACAGCACTGAGCCAATTCAGATTATTGACACATTTGCAGATAGTGTGATGTCTGTTTGTTTAACAAAAACTGAAATTATTGGAGGAAGTGTTGATGGAACTGTTCGAACATTTGACATTCGTATTGGCAGAGAAATATCCGATAACTTAGGGCAACCTGTCAACTGTGTATCAATGTCAAATGATGGCAATTGCATTCTAGCTGGTTGCTTAGACTCTACTTTGCGTCTTTTGGACAGGTCCACAGGTGAACTGTTACAAGAATATAAAGGACACACTAATAAGTCTTACAAATTGGATTGCTGCCTTACCAATATGGATGCTCATGTAACTGGTGGCTCTGAGGATGGCTTCATTTATTTCTGGGATCTTGTAGATGCATCTGTTGTTTCAAGATTCAGGGCTCATACCTcagtggtaattttttttttcactagttTATTCCTTCTGGAAGAAAGCTGTGCAAGGATGATACCAAAGGACATTATAGACctttttttcactaataattATGAATCATGGTTATGGCtgcttcaaattttcaattcttttttaagCCTCAACAAAGGAAAACTGATGTTTGATACCCTTTTACAAAAAATgctgtttaataattatgaattttcatGTAAACCATATATGATTTCTCAATTTCATTCgtaa 1062 0.3851 MSVEDLPRKEVNVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLCSCGGDRQVFYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRIGREISDNLGQPVNCVSMSNDGNCILAGCLDSTLRLLDRSTGELLQEYKGHTNKSYKLDCCLTNMDAHVTGGSEDGFIYFWDLVDASVVSRFRAHTSVVIFFFTSLFLLEESCARMIPKDIIDLFFTNNYESWLWLLQIFNSFLSLNKGKLMFDTLLQKMLFNNYEFSCKPYMISQFHS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2819 353 PANTHER WD40 REPEAT PROTEIN 6 264 - -
Ssu5g2819 353 CDD WD40 10 273 - -
Ssu5g2819 353 SUPERFAMILY WD40 repeat-like 6 274 IPR036322 GO:0005515
Ssu5g2819 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Ssu5g2819 353 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Ssu5g2819 353 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Ssu5g2819 353 Pfam WD domain, G-beta repeat 9 46 IPR001680 GO:0005515
Ssu5g2819 353 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Ssu5g2819 353 Pfam WD domain, G-beta repeat 216 256 IPR001680 GO:0005515
Ssu5g2819 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Ssu5g2819 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Ssu5g2819 353 SMART WD40_4 49 88 IPR001680 GO:0005515
Ssu5g2819 353 SMART WD40_4 91 130 IPR001680 GO:0005515
Ssu5g2819 353 SMART WD40_4 176 212 IPR001680 GO:0005515
Ssu5g2819 353 SMART WD40_4 215 256 IPR001680 GO:0005515
Ssu5g2819 353 SMART WD40_4 7 46 IPR001680 GO:0005515
Ssu5g2819 353 SMART WD40_4 135 172 IPR001680 GO:0005515
Ssu5g2819 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
Ssu5g2819 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Ssu5g2819 353 Gene3D - 5 281 IPR015943 GO:0005515
Ssu5g2819 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2819 13 273 Eukaryotic Initiation Factors Gene Family AT2G46290 24.528 1.86e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2819 K13124 - gmx:100795039 546.199