Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2815 ATGGCGAATTCGGTATACGATTACGAATACAGGGCAGAGAAGGTGGGAGTAGAAGAGCAACCAAGGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCTGCAGAGATAAGAGACCCGTTCAAGGCGACGAGAGTGTGGTTAGGAACATTTGAGACAGCTGAAGCAGCAGCCAGAGCGTATGATCAAGCTTCCTTGCGTTTCAGAGGCAGCAAAGCAAAACTCAACTTCCCTGAAAATGTTAGGCTCAGACAACCTCCCCTGAACCCACCTCCACCCACCCATTTCAGCATTTCTAATTCTCAGGGTCCCCTTTTGTCCATTCCGTCGTCTACCACTCAACCGATAGTTCACACGGAAGCTCTTCATGCTTCGCAGGGCTCCAccaatttttatgaatattattctCATGTTCATGAGTTTCCCATGAGCCTGTATGATCAGATTTCTATGTCATCTACCGTGTCTTCTCATCTTCAATCTTCGCCGTCGCCCTCAGCTTcgtattcttcttcttcaacgATGACTTCTCCGCAGGCACCTGCAGTTCCTTCCATTTATTCTACGCACCTACCCGCATGGTCTTCTGGTTACAGCTCCTCTCCCTCGGGGTGA 624 0.4712 MANSVYDYEYRAEKVGVEEQPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEAAARAYDQASLRFRGSKAKLNFPENVRLRQPPLNPPPPTHFSISNSQGPLLSIPSSTTQPIVHTEALHASQGSTNFYEYYSHVHEFPMSLYDQISMSSTVSSHLQSSPSPSASYSSSSTMTSPQAPAVPSIYSTHLPAWSSGYSSSPSG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2815 207 PANTHER DNA-BINDING DOMAIN 2 203 IPR044808 GO:0003700|GO:0009873
Ssu5g2815 207 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Ssu5g2815 207 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Ssu5g2815 207 PANTHER DNA-BINDING DOMAIN PROTEIN 2 203 - -
Ssu5g2815 207 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Ssu5g2815 207 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Ssu5g2815 207 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Ssu5g2815 207 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ssu5g2815 207 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Ssu5g2815 207 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Ssu5g2815 207 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2815 Ssu-Chr5 74183280 74183903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2815 22 86 AP2-EREBP Transcription Factor Family AT5G61890 83.077 1.59e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g2815 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2815 - - gmx:100817546 247.669