Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2808 ATGGGATGCGTTAACACCAAATTCACTCCTCCTCGGAACGGAAACCGCAACGTTGAGAGGTTGAAACGAAACAAGGAGCATGCAAAGAGTGGTTCTGCACCCAAACCAATCAGCCAGAAGGACTATTCAAGGAAACATTCATCAAACAAGCACGTGGGAGTGAGGTCGGAAGAGGAGACTAATAAGAAGAGAGTGGTATCGAGTGAGAAAGAAAGCGATAGTAATAAGGTAAAGGGTGTTGCTAGAAACGATGACAAGAGTGAGGTTGGTAATGTTTCCGAGAGATATGAGGAGAAGAAGAACATTGCACGGTATGAGTTTGTGGACGGGTGGCCAAAATGGCTGGTTGATAATATCCCACAAAACATTTTGGCTAGTTTGGTTCCCAAGAGTGCTGATTCCTATGATAAACTCggaaagGTGGGACGTGGAACATATAGCAATGTATACAAAGCCCAAGATAGGCACACTGGAAAGATTGTTGCTTTGAAGAAGGTGCGGTTTGACACATCGGATTCTGAAAGCGTCAAGTTTATGGCAAGGGAGATCATGATACTGCAGACGCTGGATCATCCCAATGTCATCAAACTGGAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTGAATACATGCAATCCGACCTAACAAGAATTATCTCTCGCCCTGGGAAGAAACTCACGGAACCACAGATCAAGTGTTATATGCGGCAGCTGCTTTTGGGGCTGGAGCATTGTCGTGATAGGGGAGTTATGCATAGAGATATTAAACCTTCTAACTTGTTAGTAGACAAAAAGGGAGCTCCTGAACTTCTTTTAGGTTCAACAGGTTATGGACATGAAATTGATCTATGGAGTGCAGGATGCCTGTTGGCCGAGATGTTTCTTGGAAGACCAATTATGCCAGGGAGGACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGCGGATTACTGGACAAAAATGAAGCTAATGACAAGCTTCCGTCCGCCACAACATTATAAAGCTAACTACGAAGAAATTTTCAAGGATTTTCCTTCCTCTGCCCGTGCTCTCTTGACCACACTTCTTGCTCTAGACTCTGACTCTCGTGGCACCGCTGCCTCTGCTCTTGAAAGTGAATTTTTCAAGTCAAGTCCATTAGCATGTGACCTTTCAGCGTTACCAGTGATCCACAAAGGCGAGGATGAACGCTCACAAAGAAAGAGACGCAAAAGGTATGCTATATCAGGTCTGAAAAATAAAGGGCAAGTATTTCAAACAAATACATGCAATGTGAACCAGTCACGAAAGAACCAAACTGCTGAATCATCAAAGGAGCAGAAGAGTGTGGCACAAAACATGAAAGGCGAAGAAACAGGGAAAAGTGGAAGCAGCACATGGTCACTCTCTATGAACGAGAGGAGCATGAGCATGAATGCATCTATGTCCCCAGTTTTTCTCTCTAGTGTGAGAAAATCCCCCAAAACTGAGGGCCATCCTAATGCTCTCAAGAACATAAAAAACTATGCCCTCTTACAAGCCTCTATAATTGATATCATCAATCGCAATGAAGGCAATGAAATTGGTCCGTTGCGTAAGTCTTTTTCTGCGTTGGATTTTCGGCTAGATCCGGAGAAGCTGTCAAGCCTCTATGGGCCAAATAAGAAGTTGGGCCATGAAATGTGA 1698 0.4358 MGCVNTKFTPPRNGNRNVERLKRNKEHAKSGSAPKPISQKDYSRKHSSNKHVGVRSEEETNKKRVVSSEKESDSNKVKGVARNDDKSEVGNVSERYEEKKNIARYEFVDGWPKWLVDNIPQNILASLVPKSADSYDKLGKVGRGTYSNVYKAQDRHTGKIVALKKVRFDTSDSESVKFMAREIMILQTLDHPNVIKLEGLATSRMQYSLYLVFEYMQSDLTRIISRPGKKLTEPQIKCYMRQLLLGLEHCRDRGVMHRDIKPSNLLVDKKGAPELLLGSTGYGHEIDLWSAGCLLAEMFLGRPIMPGRTEVEQLHMIFKLCGSPSADYWTKMKLMTSFRPPQHYKANYEEIFKDFPSSARALLTTLLALDSDSRGTAASALESEFFKSSPLACDLSALPVIHKGEDERSQRKRRKRYAISGLKNKGQVFQTNTCNVNQSRKNQTAESSKEQKSVAQNMKGEETGKSGSSTWSLSMNERSMSMNASMSPVFLSSVRKSPKTEGHPNALKNIKNYALLQASIIDIINRNEGNEIGPLRKSFSALDFRLDPEKLSSLYGPNKKLGHEM 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2808 565 MobiDBLite consensus disorder prediction 1 92 - -
Ssu5g2808 565 MobiDBLite consensus disorder prediction 16 30 - -
Ssu5g2808 565 SUPERFAMILY Protein kinase-like (PK-like) 130 391 IPR011009 -
Ssu5g2808 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Ssu5g2808 565 Gene3D Phosphorylase Kinase; domain 1 124 213 - -
Ssu5g2808 565 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Ssu5g2808 565 SMART serkin_6 135 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2808 565 ProSiteProfiles Protein kinase domain profile. 135 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2808 565 Gene3D Transferase(Phosphotransferase) domain 1 272 425 - -
Ssu5g2808 565 MobiDBLite consensus disorder prediction 430 472 - -
Ssu5g2808 565 Pfam Protein kinase domain 272 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2808 565 Pfam Protein kinase domain 135 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2808 565 PANTHER CYCLIN-DEPENDENT KINASE 272 486 - -
Ssu5g2808 565 PANTHER CYCLIN-DEPENDENT KINASE 1 271 - -
Ssu5g2808 565 MobiDBLite consensus disorder prediction 39 92 - -
Ssu5g2808 565 Gene3D Transferase(Phosphotransferase) domain 1 214 271 - -
Ssu5g2808 565 PANTHER CELL DIVISION PROTEIN KINASE 272 486 - -
Ssu5g2808 565 PANTHER CELL DIVISION PROTEIN KINASE 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2808 Ssu-Chr5 74080699 74086219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2808 130 416 Core Cell Cycle Gene Families AT5G10270 40.179 6.45e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu5g2808 Pkinase 8.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2808 K08819 - gmx:102667260 816.609