Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2799 ATGTCAACAACTTCCCATACCCTTGTTCACCACAGCTTGTTCGAGGAGCAGGATCAGATGCCTACACAGATGGGCTTCTTTCCCTTTCCAACAAACCTTACCTTCCCTCCTTTGGGTTGCCATCAATCTTCTTTGAAAGCCTTCAGCTCCATAACACCTTCTTCACTTGCTATATCTCAACAAGATTCTACATCAAATCTAACAGAAACCCTATTCTCAACCACTGCTCAAAAGTCAAGAGAAGACCTCACTTCTAGCTTTGGAGGAGCTCAATTCCTATCCTTGCATAGATCAAGTGTAAATCCATGGGCATTGGGAGAAGTGACTGGTTGCTTCAGCAGTAAAAGAAGTGGATTTGAGGATCATCATCTCGGAATTTCAGCCATGAAGATGAAGAAAATCAAGGCACGAAGGAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCATGAGCGATGTGGATGTATTGGACGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGGTATTCATGA 540 0.4444 MSTTSHTLVHHSLFEEQDQMPTQMGFFPFPTNLTFPPLGCHQSSLKAFSSITPSSLAISQQDSTSNLTETLFSTTAQKSREDLTSSFGGAQFLSLHRSSVNPWALGEVTGCFSSKRSGFEDHHLGISAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRYS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2799 179 SUPERFAMILY WRKY DNA-binding domain 148 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2799 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 177 IPR044810 GO:0003700
Ssu5g2799 179 ProSiteProfiles WRKY domain profile. 151 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2799 179 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 41 177 - -
Ssu5g2799 179 Pfam WRKY DNA -binding domain 157 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2799 179 Gene3D WRKY domain 143 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2799 Ssu-Chr5 73946998 73947805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2799 42 177 WRKY Transcription Factor Family AT4G39410 40.000 1.64e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g2799 WRKY 7.1e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2799 - - pvu:PHAVU_002G266400g 320.857