Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2795 ATGTGTCGAGGTTCAAGTTGTGATTGCCAATTACTTGTGATTGGTGTAAGAgATGCTTGTACGAAGAGAAAACAGAACTTACTtctgaaaaattcatttgcatCAGTTAACATGGGAGAGGAAAAGCCATTTGACTTCTTGCGCACTTTATTTGAGGGCTTTATTGCAGGAGGTACAGCTGGAGTAGTTGTTGAAACAGCTTTATACCCAATCGACACTATAAAAACACGTCTGCAGgCTGCTCGCGGAGTAGAAAAACTAATATTGAAAGGCCTTTATTCTGGACTGGCTGGGAACCTTGCTGGTGTCTTACCGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAAAACCTGAGTGCTTTTACTCATTTGACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACAGAGGTTATCAAGCAACGAATGCAAACTGGGCAATTTATTTCAGCTTCTGGTGCCGTTCGCTTTATTGCTTCTAAGGAAGGCTTTAAAGGGTTTTATGCAGGGTATGGATCTTTCTTGTTGCGGGATTTACCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGCACGAAGAAATCTGAATGATCCAGAAAATGCTATTATTGGCGCTTTTGCAGGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAGGGTCTGCAAACCAATATAAGGGAATCGTTGACTGTGTTCAAACCATTATTATGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTATTATGGATTGGCATAGGTGGTTCAATATTCTTTGGCGTCCTTGAGAGTACAAAACGTTTTCTTGGTGAGAGGCGTCCTACACTACCTCAGCACACATACTCAGAGAAAAGTAAAGATTAA 978 0.41 MCRGSSCDCQLLVIGVRDACTKRKQNLLLKNSFASVNMGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAARGVEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRIFPENLSAFTHLTAGAIGGIAASLIRVPTEVIKQRMQTGQFISASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYMLAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIIMEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLGERRPTLPQHTYSEKSKD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2795 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 211 IPR018108 -
Ssu5g2795 325 Pfam Mitochondrial carrier protein 224 309 IPR018108 -
Ssu5g2795 325 Pfam Mitochondrial carrier protein 129 210 IPR018108 -
Ssu5g2795 325 Pfam Mitochondrial carrier protein 50 122 IPR018108 -
Ssu5g2795 325 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 18 317 - -
Ssu5g2795 325 Gene3D Mitochondrial carrier domain 40 318 IPR023395 -
Ssu5g2795 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 48 120 IPR018108 -
Ssu5g2795 325 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Ssu5g2795 325 PRINTS Mitochondrial carrier protein signature 66 80 IPR002067 GO:0055085
Ssu5g2795 325 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Ssu5g2795 325 PRINTS Mitochondrial carrier protein signature 53 66 IPR002067 GO:0055085
Ssu5g2795 325 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 18 317 - -
Ssu5g2795 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 306 IPR018108 -
Ssu5g2795 325 SUPERFAMILY Mitochondrial carrier 50 301 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2795 Ssu-Chr5 73842710 73849846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2795 127 312 Chloroplast and Mitochondria Gene Families AT1G07030 30.890 1.49e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2795 K15111 - gmx:100811130 567.385