Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2788 ATGGACTACTACTTTGGAAACCCTCATCCTTATCCCAATTATGCTCATAATAATTCTGTTGATATGGCTCCGTCTTCCCCTGAGATCGCACTTTCCGATTATTTCATGCTCGATGATTACGTTGATCATCAAGAGTCTCGATCATCACAAAGCACCGAGTCATCAGAAAAGGCAACCTTCAGCGATGCCACTCACGGATTCAGTACGGGTGCAACCTCTAAGAGCATTAATAACATAAAATGCAAAAATGGGATTGATGGAAACAAAGCAGGAGTGGGTCCACGGATCGCGTTTAGAACCAAATCAGAGCTTGAGATCATGGATGATGGATACAAGTGGAGGAAGTACGGCAAGAAGTCCGTGAAGAGCAGTCCCAATTTAAGGAACTACTACAAATGTTCAAGTGGAGGATGCAATGTGAAGAAAAGGGTGGAAAGGGATAGAGATGACTCCAGCTATGTGATAACAACTTATGATGGTGTGCACAATCATGAGAGCCCATTTACCACCTACTACAGCCCGATCTCCATAGTACATTCTGATGCTTTTACATGTCCCGAATGA 564 0.4344 MDYYFGNPHPYPNYAHNNSVDMAPSSPEIALSDYFMLDDYVDHQESRSSQSTESSEKATFSDATHGFSTGATSKSINNIKCKNGIDGNKAGVGPRIAFRTKSELEIMDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCNVKKRVERDRDDSSYVITTYDGVHNHESPFTTYYSPISIVHSDAFTCPE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2788 187 MobiDBLite consensus disorder prediction 45 64 - -
Ssu5g2788 187 SUPERFAMILY WRKY DNA-binding domain 99 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2788 187 Gene3D WRKY domain 92 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2788 187 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 172 IPR044810 GO:0003700
Ssu5g2788 187 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 13 172 - -
Ssu5g2788 187 ProSiteProfiles WRKY domain profile. 102 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2788 187 SMART WRKY_cls 107 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2788 187 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2788 Ssu-Chr5 73760026 73762779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2788 44 177 WRKY Transcription Factor Family AT5G64810 53.731 8.36e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g2788 WRKY 4.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2788 - - gmx:100500248 321.242