Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g2775 | ATGACAGGGAAGAAGAACCAAACCAGTCCTGGGGGAAGTCCAACATCTGGTAACATCTCAGACAGCTACTCAAAAGAACAAGACAGGTTCCTCCCGATAGCCAACGTGAGCCGCATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCAAAGGAAGCCAAGGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATAAGTTTCATCACTGGTGAAGCCTCAGACAAGTGCCAGAGAGAAAAGAGGAAGACAATCAATGGTGATGATCTTCTTTGGGCCATGACCACACTTGGCTTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCTATGGCCAAACAAGAAGAGCACTCCCCAACTGATCAACATCAACCCAATGATGGGGTGGCTGAAATCAACAAGTTGCCTCATTCTGTGACTACCAAAGCTGACTTCAACACTTTCAGTGGTGGCTTCTATTCTGTGGGGCCTCAACTAACTGCTCCAAAGAGCTTCACAGAGATTGGAGGGATCAATGGTTATAGAGAGAGTTCCATGAACAGGACCATTGTTCAAAGTGCGGTCAATGGTGACCCGGAAGCAAGTGGTAACAGAATGATGCCACCTAATCTACGTTATAGGGTTGAATGGTAG | 669 | 0.4649 | MTGKKNQTSPGGSPTSGNISDSYSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTDQHQPNDGVAEINKLPHSVTTKADFNTFSGGFYSVGPQLTAPKSFTEIGGINGYRESSMNRTIVQSAVNGDPEASGNRMMPPNLRYRVEW | 222 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g2775 | 222 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Ssu5g2775 | 222 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Ssu5g2775 | 222 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Ssu5g2775 | 222 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Ssu5g2775 | 222 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Ssu5g2775 | 222 | Gene3D | Histone, subunit A | 17 | 147 | IPR009072 | GO:0046982 | |
Ssu5g2775 | 222 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 11 | 195 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Ssu5g2775 | 222 | MobiDBLite | consensus disorder prediction | 119 | 141 | - | - | |
Ssu5g2775 | 222 | SUPERFAMILY | Histone-fold | 27 | 135 | IPR009072 | GO:0046982 | |
Ssu5g2775 | 222 | MobiDBLite | consensus disorder prediction | 119 | 134 | - | - | |
Ssu5g2775 | 222 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Ssu5g2775 | 222 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 | 11 | 195 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g2775 | Ssu-Chr5 | 73612883 | 73613551 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g2775 | 11 | 127 | CCAAT-HAP3 Transcription Factor Family | AT4G14540 | 79.487 | 5.41e-64 | 194 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Ssu5g2775 | CBFD_NFYB_HMF | 1.2e-26 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g2775 | K08065 | - | gmx:100810059 | 366.696 |