Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2768 ATGGATTCTCCATCCTCCCAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCTATCCACCAAATTAGCATGTGggaagaaaatttcaaaagtaatgataataatttaactttttccaCATCCATAATTGAGGAGATGAAGTTAGATAATCAGGTTCAGGTGCAAtcagaggatacttctcaTGGAATATTGGGAACATCTATGAAGTACGGCCAAGATGCTACCAAACTTACTGATAAGTCCCAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTGACGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGTGTTTACTCCTAGTTTCTGCTATGGATCACTTTATATTGttcaatatctattttttttttctttctcttttttctcgtTTACTTGTCAATCTCTTGAGGCAACAAAACTGCAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGgaataacaatttttaagatGGAGCATGCACACTGGGTGGAGGAGCAAAATAGACAAATCTTGGAACTGAAAACTGCTTTAAGTTCTCATATCGGTGACATACAGCTCGGGACACTTGTACAAGGCATAATGAACCACTACTTTAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGgTTCTGATCCCTTTGAGTGAACCTTTGACAGAGCAACAACGGTTTGATGCCTATAGCCTTGAAAAATCATGCCAGCAAGCAGAAGATGCCCTTTCACAAGGCATGGAAAAACTTCAGCAAATGCTTGTTGACACTTTAGGGCCAGGACAAGTAGTTGAAGGAACTTACGTTCCACAGATGGATACTGCAATGGAGAGGCTGGAAGCTCTGGTGAGCTTTGTGAACCAGGTACTTATTACTTTATTCCCAGCCATTTACTTATCactttaa 1101 0.3742 MDSPSSQFVSSRRMGVYDPIHQISMWEENFKSNDNNLTFSTSIIEEMKLDNQVQVQSEDTSHGILGTSMKYGQDATKLTDKSQRRLAQNREAARKSRLRKKAYVQQLESCRLKLTQLEQEVDHAKQQVFTPSFCYGSLYIVQYLFFFSFSFFSFTCQSLEATKLQGLYIGDGLGSNNLGFAGSVNSGITIFKMEHAHWVEEQNRQILELKTALSSHIGDIQLGTLVQGIMNHYFKLFSMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLIPLSEPLTEQQRFDAYSLEKSCQQAEDALSQGMEKLQQMLVDTLGPGQVVEGTYVPQMDTAMERLEALVSFVNQVLITLFPAIYLSL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2768 366 SUPERFAMILY Leucine zipper domain 81 129 IPR046347 GO:0003700|GO:0006355
Ssu5g2768 366 Pfam bZIP transcription factor 80 112 IPR004827 GO:0003700|GO:0006355
Ssu5g2768 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Ssu5g2768 366 Gene3D - 80 132 - -
Ssu5g2768 366 Pfam Seed dormancy control 206 280 IPR025422 GO:0006351|GO:0043565
Ssu5g2768 366 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 157 354 - -
Ssu5g2768 366 PANTHER TRANSCRIPTION FACTOR TGA9 1 128 - -
Ssu5g2768 366 SMART brlzneu 77 130 IPR004827 GO:0003700|GO:0006355
Ssu5g2768 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 109 IPR004827 GO:0003700|GO:0006355
Ssu5g2768 366 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 128 - -
Ssu5g2768 366 PANTHER TRANSCRIPTION FACTOR TGA9 157 354 - -
Ssu5g2768 366 Coils Coil 100 127 - -
Ssu5g2768 366 ProSiteProfiles DOG1 domain profile. 188 366 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2768 Ssu-Chr5 73419954 73423410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2768 1 354 Calmodulin-binding Proteins AT5G65210 56.111 1.03e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g2768 DOG1 9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2768 K14431 - gmx:100780003 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2768 5 73419954 73423410 Ssu9g1671 9 53633574 53637538 PCT