Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2766 ATGACGGATTCTTCTCCTCTTATCCCTCCCCCACCCGTCACCGAGATCGACCTCGAAGCCGCTTCCACCGAACAAATTCAATGCCGGATTTGTCTTGAAACTGATgGTAGAGATTTTATAGCTCCTTGCAAGTGCAAAGGTACGTCAAAGTATGTGCATCGAGAGTGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCATTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGGTGCTGCTGATAGAAGATGGCGTACTTTGAAATTTAGGTTTTTTGTAACCAGGgacattttgtttatatttctggTTGTACAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCGAATAGATGGTTTCCAGCAGTATTGGCTTCATCTTGTTTGGGGTTTTGAAAGTGAGCTGAGCTTTTACTATATATGTGGAGCACTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTTATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGACTGTCATTTGCCAGGTACTCTTTGTATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTAGTTGCATGGGAGGTGCTGGGGAAGCAGGGCTACCATTGTTATTCATAATGGCTTTGATTTTTCTGGTACTCTTTACAGTAATTGGGATATTTTACAGTGTATTAGTGGCTACAATGGTAGGACAACGGATATGGCAGCGTCATTATCACATTCTTGCAAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACATTGATGGCGAGATAACAGGGTCTGATTGGTCTCCTCCATCCCTCCCACCGGAGCATGTACAGCAGCTGAAAACATTGGGCCTTCTATGA 954 0.4308 MTDSSPLIPPPPVTEIDLEAASTEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAADRRWRTLKFRFFVTRDILFIFLVVQLVIASLAYLVYRIDGFQQYWLHLVWGFESELSFYYICGALLFFVLLGLSGCFITCYDRRVRNDLAQPCREICLCCCQPGVCADCHLPGTLCMWTDCTACFESCGTMATECGSCMGGAGEAGLPLLFIMALIFLVLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIDGEITGSDWSPPSLPPEHVQQLKTLGLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2766 317 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Ssu5g2766 317 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 317 - -
Ssu5g2766 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 88 IPR013083 -
Ssu5g2766 317 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
Ssu5g2766 317 SMART ringv_2 27 76 IPR011016 GO:0008270
Ssu5g2766 317 CDD RING_CH-C4HC3_MARCH 28 76 - -
Ssu5g2766 317 PANTHER BNAA04G12620D PROTEIN 4 317 - -
Ssu5g2766 317 SUPERFAMILY RING/U-box 22 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2766 Ssu-Chr5 73369234 73373903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2766 5 317 C3H Transcription Factor Family AT2G22120 82.019 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2766 - - gmx:100791777 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2766 5 73369234 73373903 Ssu9g1672 9 53680960 53685941 PCT