Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2764 ATGACGACGTCTCTGTGTGAGCTTCTGTACCAGTTTTATGCCAAGACAATAGTCCTAATAACATACATGCTAATAGAACTTATCCTTATCATTCAGTACCTTATAAAGTCAGATACACGCCCCATATCAACCACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAATTCGGTGCACTAGAACCCTGAAGGCAGAGCACATAGACTGCAGAGTGTGCTTATCCGAATTCGAGGAAGGGGAGAAGGTGAGGAACCTCAACTGCAGACACACATTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACGTGCCCTCTTTGCAGGAACAAGGTGCTGCCAGATGATGTTGTCGCCAACTACAACTTGCTTCAAAACCAGGTAGAATATGATGGGAATGATGATGACCAACTTATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACAGATATCTCTGa 480 0.4396 MTTSLCELLYQFYAKTIVLITYMLIELILIIQYLIKSDTRPISTTQYLNFIEEKNPTIRCTRTLKAEHIDCRVCLSEFEEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDVVANYNLLQNQVEYDGNDDDQLIFLLSALRGGSTLHRYL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2764 159 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Ssu5g2764 159 Pfam Ring finger domain 70 113 IPR001841 -
Ssu5g2764 159 PANTHER - 3 154 - -
Ssu5g2764 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 118 IPR013083 -
Ssu5g2764 159 SUPERFAMILY RING/U-box 51 121 - -
Ssu5g2764 159 CDD mRING-H2-C3H2C2D_ZSWM2 71 113 - -
Ssu5g2764 159 SMART ring_2 71 112 IPR001841 -
Ssu5g2764 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2764 Ssu-Chr5 73339694 73340173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2764 70 123 C3H Transcription Factor Family AT1G15100 59.259 1.90e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2764 K16282 - gmx:102669811 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2764 5 73339694 73340173 Ssu9g1674 9 53705597 53706067 PCT