Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g2764 | ATGACGACGTCTCTGTGTGAGCTTCTGTACCAGTTTTATGCCAAGACAATAGTCCTAATAACATACATGCTAATAGAACTTATCCTTATCATTCAGTACCTTATAAAGTCAGATACACGCCCCATATCAACCACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAATTCGGTGCACTAGAACCCTGAAGGCAGAGCACATAGACTGCAGAGTGTGCTTATCCGAATTCGAGGAAGGGGAGAAGGTGAGGAACCTCAACTGCAGACACACATTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACGTGCCCTCTTTGCAGGAACAAGGTGCTGCCAGATGATGTTGTCGCCAACTACAACTTGCTTCAAAACCAGGTAGAATATGATGGGAATGATGATGACCAACTTATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACAGATATCTCTGa | 480 | 0.4396 | MTTSLCELLYQFYAKTIVLITYMLIELILIIQYLIKSDTRPISTTQYLNFIEEKNPTIRCTRTLKAEHIDCRVCLSEFEEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDVVANYNLLQNQVEYDGNDDDQLIFLLSALRGGSTLHRYL | 159 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g2764 | 159 | ProSiteProfiles | Zinc finger RING-type profile. | 71 | 113 | IPR001841 | - | |
Ssu5g2764 | 159 | Pfam | Ring finger domain | 70 | 113 | IPR001841 | - | |
Ssu5g2764 | 159 | PANTHER | - | 3 | 154 | - | - | |
Ssu5g2764 | 159 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 118 | IPR013083 | - | |
Ssu5g2764 | 159 | SUPERFAMILY | RING/U-box | 51 | 121 | - | - | |
Ssu5g2764 | 159 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 71 | 113 | - | - | |
Ssu5g2764 | 159 | SMART | ring_2 | 71 | 112 | IPR001841 | - | |
Ssu5g2764 | 159 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 3 | 154 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g2764 | Ssu-Chr5 | 73339694 | 73340173 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g2764 | 70 | 123 | C3H Transcription Factor Family | AT1G15100 | 59.259 | 1.90e-19 | 78.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g2764 | K16282 | - | gmx:102669811 | 282.337 |