Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2752 ATGGCCACCACACTCAGTTGGAGACTCGCTGCCAACAACGGCACCACCCTTGCCGCAAATGATCTGGAAAGAAATGGTGACGGGAAGACTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTGAAGATGGGATTGAGAGATCGTAGCAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGCGCCGGAGAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTTATAGATATGCGGGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGTTCATTAAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAACGAGCTAAGGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTACTGAAGTCCAGTTCTACTGAAGGGCAGATTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGTGTAAAAGATCATGTTGGTTCAAAAATTTTTTCAACTGAAGGAGTTGTACCGGTGCTGTGGGAGCAGCTGAAAAGTGGCCTGAAGACAGGAAGTGTTGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAATACTGAGGGATTCTGGAATGCAACAATACGAGCCGGAGGAGTGGACGTATTAGTGAAGTTACTGGCAACAGGACAGCCTAGCACTTTAGCTAATGTGTGTAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCAGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCCGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCCCAGTGCAAAGAGGCTAGACGAGAGATAGCCAATTCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAATGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTTGCAAACATCTCTGGGGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCTCTCATGATATATGATAACAAGGCAGAATCTACCAGAGCATCAGATCCTTTGGTTGTCGAGCAGACATTACTCAAACAATTTAAACCTCGCTTGCCCTTCCTTGTACAGGAACGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATTCCATACTTTCAAATAAACTTGCAAATTCTGATGCAAAACATCTGCTTGTTGGTTTGATAACAATGGCAGCCAATGAAGTGCAAGACGAGCTTATAAAAGCTCTGTTGACTCTGTGCAAAAGTGAAGGTAGTCTATGGCGTGCACTTCAGGGCCGTGAAGGAGTTCAGCTTTTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAGCAAGAGTGTGCAGTTGCCCTGCTTTGCCTTCTATCATATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTGAAGAATCTGTGCAATCATAGTGAAGATATACGTGCTTGCGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAACGGAAGCCCAAATGGGAAGGATATTGCAGCGAAGactttaaatcatttaattcataaatcTGATACTACGACCATCAGTCAGCTTACAGCATTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTGCGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACCATGATAATATTATTGAGCTCTACCAAGGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTCGAAACAAGGAAAGATGTGCGTGAAAGTAGCATTGCTGTTAAAACTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTGATTGAGTCCTCACACTGCCTGTCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGCTAGAGACACATTATCCCCCCTAATTGCACTAGCAAACTCTTCAGTTTTGGAAGTTGCAGATATGGCCATATGTGCTCTGGCAAACCTTATTTTGGATAGTGAAATTGCGGAGAAAGCTATTGCAGAAGAAGTTATCTTACCTGCTACTAGAATATTATGTGAAGGCACAATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGGATGTTGATTATGCTGTAACTGATTGTGTGAATCGTGCTGGAACGGTTCTCGCATTAGTTTCTTTCTTAGATGCTGCTGTTAATGGATCTGTTGCCACATCAGAGGCTCTAGAAGCACTTGCCATCCTGTCCAGGTCGGAAGAGACCAGTTCAAATATTAAACCTGCTTGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCAGAGCCAATGTTGCAGGATAAAACTATTGAGATTTTATCTAGATTATGTAAGGATCAACCTGTTGTATTAGGAGATACTATTGTGTCAGCACCTGGATGTATATCTTCAGTAGCTAAGAGAGTAATTAGTTCCACAaatataaagatcaaaattggGGGAGCCGCACTTCTTATTTGTAGTGCAAAAGCAAATCATCAGAGACTGGTGGAGGATCTCAATTCATCAAACTTGTGTTCTGATCTTATTCAGTCTCTCGTTGATGGGCTTATTTCTGCACAGCCTTCTTCGGGTTACCTGGATGATGACAACAAGGAATTCATTAGCATATGCAGGTACACAAAAGAAGAGGCCAACGGTTGTGAACCCAACACTAGCACCAGCATTATATGTGGTGCTGACTTGGCTTTATGGTTACTGTCTATTCTTGCTTGTCAtgatgaaaaaaacaaaattgcaatAATGGAGGCTGGAGCAATTGATGTTCTCACTGACAGGATCTCGAATTGTTTCTCACAATATTCTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTCATGCTTTGTTGTTGgcaatattatttcaaaatagagATGTCATACGGGCGCATTCAACCATGAAATCTGTACCAGCACTAACCAGTTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCGAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAAGAATTTTCCTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGAGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGTCCAGGGGCACCATTTTTGACACTTGGGCTTTTGACTCAGCTTGGTAAAGATTGTCCATCAAATATGAGTGTAATGGTGGAGTCTGGGGCCTTAGAGGCACTTACAAAGTATCTTTCACTGGGTCCACAGGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAAATACGAAAACATGAAGCAGCATTTGGTGCTGTTACTCAACTTGTTGCTGTTCTACGTTTAGGAGGAAGAGTGGCTAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCAGAGATTGCTCGGCAGGCTGTTCAACCATTGGTGGAGATTCTCAGTACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATCCTTTCATCAAATTGTTCAATGGACCTGAAAGGGGATGCTGCTGAATTATGTTGGGCTCTTTTTGGAAATACAAGGATTCGGTCCACGGCTGCTGCTGCACGCTGTGTTGAACCACTTGTCTCTCTCCTTGTAACTGAGTTTAGTCCAGCTCAGCTTTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTCTGGTAGGAACTATGTACTTCATGAGGCCATATCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCTGATTATCTATGTGCAGCTTTTGCTGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCGTCTGCTGCTAAAGTGGTTGAAcccttgtttttgttgttgacaAGACAGGAATTTGGGCCTGATGGACAGCACAGTGCAATGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGCCGTGCTGACTTTTCATTGACTTCTCACCAAGTTATTGAACCACTTATCCCTTTGCTTGATTCTCCAATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTGTAGAAGAACACCTTCAGAAGGATCCAGTGATACAGCAAGTGATTGGCCCTCTCATTCGAGTTCTTGGTTCTGGTATACACGTATTGCAGCAGAAAGCTGTAAAAGCCCTAGTTAGTATTGCACTAACATGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGACCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCATCGGTTTTGTCAAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGGTTGCTTCGATCTGGATCTGAGAGCACAGTTTTTGGTGCTTTAAATGCTCTTCTGGTGTTGGAAAATGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTACGATTTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGaaacaaaagtaacaaaatcAGCTATTGTACCATTATCCCAGTACCTTTTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGAGCTTTAGTGAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTACAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCAGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTAATCCAGAAACGTCAGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCGAATAATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCGATTACTGCCGCCATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGAAGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAACCGGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCGGCATTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCACTGCTGCAGTATTTAATCCAGTCTGGCCCACCTCGGTTCCAGGAAAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTACTGCAAGCTGACACTTGGCAACACTCCACCAAGGCAAACCCagGTGGTTTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCGTGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACGATCCAGATTGATCGAGTGGTAATGCTTGGTTCAGTAGCTGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGCCCCCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6456 0.4274 MATTLSWRLAANNGTTLAANDLERNGDGKTQDSEPPTPHSVLKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSAPEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKSGLKTGSVVEGLLTGALKNLSSNTEGFWNATIRAGGVDVLVKLLATGQPSTLANVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNSILSNKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMIILLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLCSAMKLLNVESESILIESSHCLSAIFLSIKENRDVAAVARDTLSPLIALANSSVLEVADMAICALANLILDSEIAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRDVDYAVTDCVNRAGTVLALVSFLDAAVNGSVATSEALEALAILSRSEETSSNIKPACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSVAKRVISSTNIKIKIGGAALLICSAKANHQRLVEDLNSSNLCSDLIQSLVDGLISAQPSSGYLDDDNKEFISICRYTKEEANGCEPNTSTSIICGADLALWLLSILACHDEKNKIAIMEAGAIDVLTDRISNCFSQYSQIDYKEDSSMWIHALLLAILFQNRDVIRAHSTMKSVPALTSLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLTLGLLTQLGKDCPSNMSVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRKHEAAFGAVTQLVAVLRLGGRVARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCWALFGNTRIRSTAAAARCVEPLVSLLVTEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSAMQVLVNILEHPQCRADFSLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLVEEHLQKDPVIQQVIGPLIRVLGSGIHVLQQKAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVFGALNALLVLENDDGTSAEAMAESGAIEALLELLRFHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 2151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2752 2151 ProSiteProfiles C2 domain profile. 2011 2128 IPR000008 -
Ssu5g2752 2151 Gene3D - 823 1181 IPR011989 -
Ssu5g2752 2151 Coils Coil 297 324 - -
Ssu5g2752 2151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Ssu5g2752 2151 SMART C2_3c 2031 2127 IPR000008 -
Ssu5g2752 2151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2133 IPR035892 -
Ssu5g2752 2151 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2151 - -
Ssu5g2752 2151 Gene3D - 1182 1297 IPR011989 -
Ssu5g2752 2151 Gene3D - 654 822 IPR011989 -
Ssu5g2752 2151 MobiDBLite consensus disorder prediction 18 57 - -
Ssu5g2752 2151 Gene3D C2 domain 2030 2151 IPR035892 -
Ssu5g2752 2151 Gene3D - 1298 1379 IPR011989 -
Ssu5g2752 2151 SMART arm_5 136 176 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1857 1897 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 311 360 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 268 309 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 482 523 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1398 1438 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 94 135 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1566 1607 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1312 1352 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1609 1648 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 733 771 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 567 607 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 817 859 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 525 565 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1229 1270 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1730 1769 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1481 1521 IPR000225 GO:0005515
Ssu5g2752 2151 SMART arm_5 1439 1479 IPR000225 GO:0005515
Ssu5g2752 2151 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Ssu5g2752 2151 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Ssu5g2752 2151 SUPERFAMILY ARM repeat 1580 2027 IPR016024 -
Ssu5g2752 2151 SUPERFAMILY ARM repeat 1408 1657 IPR016024 -
Ssu5g2752 2151 SUPERFAMILY ARM repeat 1081 1438 IPR016024 -
Ssu5g2752 2151 Pfam C2 domain 2030 2119 IPR000008 -
Ssu5g2752 2151 CDD C2 2032 2122 - -
Ssu5g2752 2151 Gene3D - 407 653 IPR011989 -
Ssu5g2752 2151 SUPERFAMILY ARM repeat 614 953 IPR016024 -
Ssu5g2752 2151 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2151 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Ssu5g2752 2151 SUPERFAMILY ARM repeat 56 643 IPR016024 -
Ssu5g2752 2151 Gene3D - 1380 1617 IPR011989 -
Ssu5g2752 2151 Gene3D - 1618 2029 IPR011989 -
Ssu5g2752 2151 Gene3D - 50 406 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2752 Ssu-Chr5 73231108 73241523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2752 496 620 U-box Gene Family AT3G46510 32.540 2.44e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2752 - - gmx:100794002 3865.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2752 5 73231108 73241523 Ssu9g1681 9 53789176 53798633 PCT