Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2750 ATGGCACTCTCACTCTCCTCCGGTGTACGCGTTCCTTACTGTTCTCCTTCATGTTTTTTGAAACCAAACGGGAAGAGTTGCAAAGCGCCTCCTAAGGTATCATGTGCAGCTCACAATAACCATAAAAACCCATTGGTTGGAATCGGTATTGGGGTCGTAACGGCTTGCGTGGTGGGTTTCACGGCGTTGGACGCGGACGCCACGAGAATCGAATACTACGCTACCGTGGGAGAGCCTTTGTGTCAGTACAACTATGTTAAGTCTGGCCTCGGTTACTGCGATATTGTTGAGGGCTTCGGTGACGAAGCTCCACTCGGTGAGCTTATCAATGTTCACTATACTGCTAGATTCGCTGATGGCATAGTCTTTGATAGCAGCTATAAACGTGCTAGACCTCTCACCATGCGCATTGGCGTTGGCAAGGTAATCAAGGGACTAGATCAGGGAATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAACTGCAGATTCCTCCGCACTTAGCATATGGCCCCGAACCAGCAGGGTGCTTCTCAGGTGACTGCAATATACCCGGCAATGCCACTCTTCTGtatgatattaattttgttgagaTTTATTCGGGGAACAGATCAAAGTGA 636 0.4811 MALSLSSGVRVPYCSPSCFLKPNGKSCKAPPKVSCAAHNNHKNPLVGIGIGVVTACVVGFTALDADATRIEYYATVGEPLCQYNYVKSGLGYCDIVEGFGDEAPLGELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPHLAYGPEPAGCFSGDCNIPGNATLLYDINFVEIYSGNRSK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2750 211 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 26 209 IPR044183 GO:0009507
Ssu5g2750 211 Gene3D - 80 203 IPR046357 GO:0003755
Ssu5g2750 211 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 106 205 IPR001179 GO:0003755
Ssu5g2750 211 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 103 200 IPR001179 GO:0003755
Ssu5g2750 211 SUPERFAMILY FKBP-like 83 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2750 Ssu-Chr5 73208397 73210205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2750 86 206 Calmodulin-binding Proteins AT3G25230 39.024 8.43e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2750 K01802 - gmx:100500547 388.652