Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2746 ATGTTGTGGGTGGACAAATATCGCCCCAAAACCCTCGACCAGGTTATGGTCCACTCAGACATCGCTTACAATCTCAACAAATTGGTAACGGAACAGGATTGCCCCCATTTACTCTTCTATGGCCCATCTGGCTCCGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTCGGACCTGGTGCCGAAaagGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCCGGGAGTAGATCCATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCACATCGAAATGAGTCCAAGTGATGCAGGATTTCAGGACAGATACATTGTTCAGGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGATTTAAAGTACTTGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCTAGAGTCACAGAAGCAATCCGCTCTCGATGTCTCAATGTACGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTAGAATTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTCCTGGTTTTGCTGCTCGCATTGCACAGAAATCAAATCGGAATTTAAGGAGGGCTATATTGTCATTTGAGACTTGTCGTGTCCAACAATATCCTTTCTCTAACAAACAAACAATTCCTCCAATGGACTGGGAAGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCGAAAAGGTTGTTTCAAGTTCGAGGAAAGCTCTATGAGCTGCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGGTAAAGCATTCCTTTATGATGTTGCTTGTAAGGTTTttgtttttcgttttttttactttactttaa 951 0.4006 MLWVDKYRPKTLDQVMVHSDIAYNLNKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSANHIEMSPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIAQKSNRNLRRAILSFETCRVQQYPFSNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKVKHSFMMLLVRFLFFVFFTLL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2746 316 SMART AAA_5 33 192 IPR003593 -
Ssu5g2746 316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Ssu5g2746 316 SUPERFAMILY post-AAA+ oligomerization domain-like 251 296 IPR008921 GO:0003677|GO:0006260
Ssu5g2746 316 Gene3D - 190 250 - -
Ssu5g2746 316 Gene3D - 252 305 - -
Ssu5g2746 316 Pfam DNA polymerase III, delta subunit 24 188 - -
Ssu5g2746 316 CDD AAA 35 190 - -
Ssu5g2746 316 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 298 - -
Ssu5g2746 316 Gene3D - 1 189 IPR027417 -
Ssu5g2746 316 CDD HLD_clamp_RFC 189 257 - -
Ssu5g2746 316 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2746 Ssu-Chr5 73164435 73167692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2746 1 295 Core DNA Replication Machinery Family AT5G27740 83.390 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2746 K10756 - gmx:100818329 577.4