Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2744 ATGGCTTTGTCAACCATTGAGAGCTGCAAGGTAGAGGAGCCAGTGGTGGTGGATACTGAGAAGGTGGCTTCAGAACACTATGAAAGGTCTCAGTGGGTGCTCAATGCTCCTGATCCCCCAACTACGTGGCACAACCTCATGGGTTCTGTGAGGAACACAATTTCACCGTACCAAGAAATGTGTTCTTCTCTAAGAGGCCAAGCTGGACCTAAAGTTGTACTTTCCTTCATGCGAGGCATTTTTCCTATTCTTCATTGGGGTCGAAATTATACACCAGCCAAATTCAGGAACGACTTACTTGCAGGTCTAACCATTGCAAGTCTCTGCATTCCTCAGAGCATTGGGTATGCCACTTTAGCCAAGCTTGATCCTGAATATGGCCTCTATACTAGTGTCGTGCCACCTCTTATCTATGCATTAATGGGAACTTCAAGAGAAATAGCAATTGGACCCGTGGCCGTGATATCGCTTCTTTTGTCATCAATGATTCAGAAATTAATAGACCCTGCCATTGATCCAAATGGTTACAGAAAGCTTGTTTTCACTGTCACCTTCTTTGCTGGCATATTTCAAGCTGCTTTTGGACTCTTTAGGTTGGGATTCCTTGTGGATTTTCTCTCTCATGCTGCTATTGTTGGATTCATGGCGGGAGCAGCTATAGTAATTGGTCTTCAGCAGCTGAAGGGACTATTTGGGATCAATCATTTTACCAACAAAACCGACATAATCTCTGTCATGAAATCCGTTTGGGAATCGGTTCATCATCCCTGGAATCCCCGCAATTTTGTCCTGGGATGTTCATTCTTCATTTTCATCCTGTTTACCAGATTTCTGGGtaaaaggaaaagcaaactGTTCTGGCTGCCAGCAATATCCCCCCTTGTATCAGTTATGTTGTCAACTCTTATTGTTTTTCTGACTCGAGCTGACGAAAGTGGAGTTAATATTGTGAAACATATAAAAGGAGGACTGAATCCAAGCTCTATCAATCAGATAGAGTTGAACAGCCCCCATATTGGAGCACTGGCCAAAATTGGACTAGTTGTTGCTGCTGTTGCACTCACTGAATCACTTGCTGTTGGCCGATCTTTTGCATCCATGAAAGGATACCACCTTGATGGAAACAAGGAAATGGTGTCATTAGGCTTCATGAACATCATAGGATGCTTCACATCTTGCTATGTTGCAACTGGTTCTTTCTCCCGCACGGTGGTTAATTTCACTGCTGGTTGTGAAACATTAGCGTCAAACATTGTGATGGCCATTGTGGTCTTCATATCACTACAATGTTTGACGAAGCTATTGTATTTTACACCAACTGCTATTCTCGCTTCAATAATCCTTTCAGCTCTCCCGGGACTCATTGACATCAACGAAGCTTACAAAATATGGAAAGTTGATAAGCTTGATTTTCTTGCTTGCATTGGAGCCTTCTTCGGGGTGCTGTTCGCGTCAGTGGAAATTGGTCTGCTAGTGGCGgTGGCGATATCTTTCACAAAGATAATTTGGATCTCAATTGGACCAGGCACAGAAACTCTGGGAAGACTTCCCGGCACAGATGTGTTCTACGATGTACAGCAGTATCCAATGGCTGTTAAGACTCCTGGGGTTGCAATAATACGCGTCAAGTCTGCATTGCTTTGCTTTTCTAATGCCGATGCAGTCAGAGAAAGGATTCTGAAATGGATCACTCGTGAAGAAGCAGAGGGAAACAAGGAAGGTAACACCAGAAGCATAATTCAGCTCGTAATCCTTGACGCCTCAAATTTGGTGAGCATCGACACCTCAGGAATTGCTTCCCTAGAGGAACTGCGTAAGAGTTTGGTCTCAAGTGGGAAGCAGCTAGCAATTGCCAATCCCAGTTGGCAAGTGATTTACAAGCTAAAGGCGACCAACTTTGTGACAAGAATTGGAGGACGAGTCTTCTTGACAATTGGAGAAGCCATTGAATGTAAGCTGGATTTCTAA 1968 0.436 MALSTIESCKVEEPVVVDTEKVASEHYERSQWVLNAPDPPTTWHNLMGSVRNTISPYQEMCSSLRGQAGPKVVLSFMRGIFPILHWGRNYTPAKFRNDLLAGLTIASLCIPQSIGYATLAKLDPEYGLYTSVVPPLIYALMGTSREIAIGPVAVISLLLSSMIQKLIDPAIDPNGYRKLVFTVTFFAGIFQAAFGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLFGINHFTNKTDIISVMKSVWESVHHPWNPRNFVLGCSFFIFILFTRFLGKRKSKLFWLPAISPLVSVMLSTLIVFLTRADESGVNIVKHIKGGLNPSSINQIELNSPHIGALAKIGLVVAAVALTESLAVGRSFASMKGYHLDGNKEMVSLGFMNIIGCFTSCYVATGSFSRTVVNFTAGCETLASNIVMAIVVFISLQCLTKLLYFTPTAILASIILSALPGLIDINEAYKIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVAISFTKIIWISIGPGTETLGRLPGTDVFYDVQQYPMAVKTPGVAIIRVKSALLCFSNADAVRERILKWITREEAEGNKEGNTRSIIQLVILDASNLVSIDTSGIASLEELRKSLVSSGKQLAIANPSWQVIYKLKATNFVTRIGGRVFLTIGEAIECKLDF 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2744 655 PANTHER SULFATE TRANSPORTER 20 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu5g2744 655 SUPERFAMILY SpoIIaa-like 532 650 IPR036513 -
Ssu5g2744 655 Pfam STAS domain 528 648 IPR002645 -
Ssu5g2744 655 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 20 651 - -
Ssu5g2744 655 Pfam Sulfate permease family 95 475 IPR011547 GO:0016021
Ssu5g2744 655 TIGRFAM sulP: sulfate permease 82 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu5g2744 655 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Ssu5g2744 655 Gene3D STAS domain 507 653 IPR036513 -
Ssu5g2744 655 ProSiteProfiles STAS domain profile. 547 652 IPR002645 -
Ssu5g2744 655 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2744 Ssu-Chr5 73146348 73156345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2744 21 650 Inorganic Solute Cotransporters AT5G10180 67.619 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2744 K17469 - gmx:100775538 1155.58