Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2734 ATGCCTTTAGTGGGTAAAATTGCTACTGATGTGGCTACACGGGGATTGGATATTCCAGATGTTGAAGTAGTGACCAACTATAGTTTTCCTCTGACTACAGAGGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCTATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTGCCGGATGCCCTCTTGAAATTTTTCTCCACTTCTGATTATGCTCCAATTCAGATTGAATCCAAGCTTTATGGGGCACACTTCAAGGAAATCCCTATCGATGCTCCAAAGTCTCATAAGAAAACATTTGACTACTCTGACGATGAAGACTAA 384 0.4271 MPLVGKIATDVATRGLDIPDVEVVTNYSFPLTTEDYVHRIGRTGRAGKKGVAYTFFTQQNKGLAGELVNVLREAGQIVPDALLKFFSTSDYAPIQIESKLYGAHFKEIPIDAPKSHKKTFDYSDDED 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2734 127 Gene3D - 6 91 IPR027417 -
Ssu5g2734 127 Pfam Helicase conserved C-terminal domain 7 47 IPR001650 -
Ssu5g2734 127 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 7 112 - -
Ssu5g2734 127 CDD SF2_C_DEAD 7 56 - -
Ssu5g2734 127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 86 IPR001650 -
Ssu5g2734 127 PANTHER BNAA08G07020D PROTEIN 7 112 - -
Ssu5g2734 127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 85 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2734 Ssu-Chr5 72973068 72973834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2734 7 93 Eukaryotic Initiation Factors Gene Family AT5G11200 37.931 5.80e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2734 K14811 - gmx:100806057 194.512