Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2732 ATGGCAACAACCGCTATAGATATGTACAATAACAGCAACGTCGTACCGGATTTGCTGGATCCGTATAATGAAGAGCTGATGATAGCACTTAAGCCTTTTATGAAAAGTGATTATTTCTCTGCCTCTTCTACCGCCTACccttcttcttattattctcCCCTTTCATCTAACTCTCTGCTCAATTTGTATCCTTCCCCCAACCAAATCAGGCTCAACCAACTCACCCCAGACCAAATTCTTCAGATTCAGGCCCAAATCCACATTCAGCAGCAGCACGTGGCTGGCGTAGCCGCAGCTTCGGCCCAacaccaaaaccaaaacctcCTGGGCCCAAAACGCGTCGCCATGAAGCACGCTGGCACGCCCGCGAAACCCGCGAAGCTCTACCGCGGGGTGCGACAGCGGCATTGGGGCAAGTGGGTGGCCGAGATCAGACTCCCGAAGAACCGCACGCGTCTCTGGCTCGGAACATTCGACACTGCAGAGGAAGCGGCGTTGGCGTACGACAACGCAGCGTTTAAGCTCAGGGGCGAGTTCGCGCGCCTCAATTTCCCTCATCTACGACACCAGGGAGCGTTCGTTTTCGGCGAGTTTGGAGATTACAAGCCGCTGCCTTCTTCCGTGGATTTGAAGCTGCAAGCTATCTGCGAGAGCTTAGCGATTTCCCGCAAACAAGAGGAAAAGCCCTGTTGCTCTGTCCAAGACGTGAAGCCCGTGATACACCCTGCTGAGCTGGCAGACGTGGCGCAATTGAACGGTGAATATGTTTGTCCCGAGTTCGAGGATTTTAAGGTGGAGAACGAGAACCCTATGTTGTCGCCTGTTTCTGGCGAATCTTCTTCGCCTGAGTCCGGCGTTACTTTCTTGAATTTCTCCGATTCTAATCAGTGGGATGAAACGGAGAATTTCGGGTTGGAGAAGTACCCCTCTGTGGAGATTGATTGGGAAGCTATATGA 957 0.5057 MATTAIDMYNNSNVVPDLLDPYNEELMIALKPFMKSDYFSASSTAYPSSYYSPLSSNSLLNLYPSPNQIRLNQLTPDQILQIQAQIHIQQQHVAGVAAASAQHQNQNLLGPKRVAMKHAGTPAKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVDLKLQAICESLAISRKQEEKPCCSVQDVKPVIHPAELADVAQLNGEYVCPEFEDFKVENENPMLSPVSGESSSPESGVTFLNFSDSNQWDETENFGLEKYPSVEIDWEAI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2732 318 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Ssu5g2732 318 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Ssu5g2732 318 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
Ssu5g2732 318 SMART rav1_2 128 191 IPR001471 GO:0003700|GO:0006355
Ssu5g2732 318 CDD AP2 127 187 IPR001471 GO:0003700|GO:0006355
Ssu5g2732 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 69 318 - -
Ssu5g2732 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 4 66 - -
Ssu5g2732 318 Gene3D AP2/ERF domain 128 186 IPR036955 GO:0003700|GO:0006355
Ssu5g2732 318 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Ssu5g2732 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 69 318 - -
Ssu5g2732 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 66 - -
Ssu5g2732 318 SUPERFAMILY DNA-binding domain 128 186 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2732 Ssu-Chr5 72947172 72948128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2732 5 318 AP2-EREBP Transcription Factor Family AT4G39780 48.580 5.71e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu5g2732 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2732 K09286 - gmx:100818839 441.81