Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2709 ATGCTTCATTTTCTTCTCAGGAAAACCCACAAGCATTCGGTTTTCTTGCTTCATATCTCAGCAGTTCTcataagaaattattACGATCTTGACATTGAAGCAGGGAAACTCAACAACCCCAAGGAAGACCACAACCTCTCCCAGTTCTTCCAAGAAGTTGGAGCAATCAAGATTGAAACGGAAGAGATTACCAATCTCTTATCCGATATTTGGCAACTGCATGAAGAGACAAAGTGCAACCACAGTGCCAAAGTTCTACGTGGCCTAAGGGACCGCATGGAGTCCGACATGGTTGCCTTGTTTCGCAAGGCAAGGATTATCAAGTCAACGGTCGAGGACCAGAATGTCCATCACAAATGGTTTGGGGTCAAACTTAGGGACATGATGCATGACATTCAATCCTTGAGAGACAAGGTTCTATCAGATCACAAGGATGATTTGAAGAAAAGGTTCTACACAGCAACGGGTGAGGTTCCCAGTGAGGAGGTGACGGAGAAGTTGATTTCGGGGAGTCTCAAAGTTGAGTTTATGGCTGGGAAAACGGATAATGCTGATTTGGGTGTTAGGCATGAGGCAGTGATGGATATCCAAAGGAGTTTGAAAAAGCTTCATCAGGTTTTTCTTGACATGGCTATTCTGGTTGAGACACAACGAGAAGCCGTGGATAGCATTGAGGATAATGTGGCCAGTGCGGGTAACTACATCCACGGTGGGACTAATAGTCTTTACCATGCCAActag 741 0.4426 MLHFLLRKTHKHSVFLLHISAVLIRNYYDLDIEAGKLNNPKEDHNLSQFFQEVGAIKIETEEITNLLSDIWQLHEETKCNHSAKVLRGLRDRMESDMVALFRKARIIKSTVEDQNVHHKWFGVKLRDMMHDIQSLRDKVLSDHKDDLKKRFYTATGEVPSEEVTEKLISGSLKVEFMAGKTDNADLGVRHEAVMDIQRSLKKLHQVFLDMAILVETQREAVDSIEDNVASAGNYIHGGTNSLYHAN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2709 246 CDD SNARE_syntaxin1-like 184 242 - -
Ssu5g2709 246 Pfam Syntaxin 117 217 IPR006011 GO:0016020
Ssu5g2709 246 Pfam Syntaxin 48 113 IPR006011 GO:0016020
Ssu5g2709 246 Gene3D - 184 246 - -
Ssu5g2709 246 Gene3D - 41 121 - -
Ssu5g2709 246 PANTHER SYNTAXIN 29 115 IPR045242 -
Ssu5g2709 246 SUPERFAMILY t-snare proteins 43 238 IPR010989 GO:0016020|GO:0016192
Ssu5g2709 246 PANTHER SYNTAXIN-112 123 246 - -
Ssu5g2709 246 PANTHER SYNTAXIN 123 246 IPR045242 -
Ssu5g2709 246 Coils Coil 246 246 - -
Ssu5g2709 246 SMART tSNARE_6 178 245 IPR000727 -
Ssu5g2709 246 PANTHER SYNTAXIN-112 29 115 - -
Ssu5g2709 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 245 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2709 Ssu-Chr5 72544658 72545889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2709 29 246 SNARE and Associated Proteins AT2G18260 47.581 4.00e-66 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2709 K08486 - gmx:100779708 303.138