Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2706 ATGGCTGAGACCAGACACTACGTTCTCTCCTCTCAATTGGATATTAAGCAAATTGTTTCAGAAGCACAGCATCGATGGCTACGTCCGGCTGAAATTTGTGAAATTCTCAGCAATTATAAGAAGTTTCAAATTGCTTCAGAACCTGCACATATGCCAACGAGTGGTTCACTTTTCTTGTTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCATAACtggaggaagaaaaaagatggaaaaaCAGTGAGAGAAGCTCATGAGAGACTAAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCTCatggagaagaaaatgaaaattttcaaagacgCACGTATTGGATGCTTGATGAGGAACTCTCTCACATTGTTCTCGTCCATTATCGACTAGTGAAGGGAACCAAGGCAAATTCTACATGTgctaaagaaaatgaagaatccCTTCCTTATGCTCAACAAATTGACAAAAGTATGCCCAAAACAGAGATGAACACTTCTTTACCATCTACTCTACATCCACATGGGTACCAGGTTCCTTCACAAACTATAGATACAAGCATGAACAGTGCCCAAGCATCAGAATATGAAGAAGCTGAATCCGCACTCAATAACCATGCAAGTTCGGAGTTCTATTCTTTCCTTAAGTTACAACTCCCTGTTGAGAAGATTAAAGCTCAACCTGCTGATTCTTATTGTCCTAATGATCAAGAGAAGTTGCCTGTCATTCCTGGGATGAATTATATCTCACTCACTCAAGGCAATAAAATCAAAGACATTCATAATGTTGGATTGACATATGAATCCCCAAAACCCTTTGTCTTTTCCTCATGGGAAGGTATCTTAGAAAATAATGCTGGAAGTCAACATCTGCCTTTTCAGCCTTTATTTCCTGAAACACAACTTGATACCATGGGAATCAATAGCAATTTTTCTCAAGGAGATGAGATAATGATGCCACATTTGACCACCGGCATTGCTAAGCAGCATGAAAATGGAAGTCTCATACAAGCTGAAGGAAATTGGCAGGTTTATGGTGTTAATTCTTTGCGCGTGTCTAGTTGGCCCATAGATAGTGTGTATTCAGGCTTAACATGTGAGGTTAATTGTAGCAACCGTGAGCAGGAAGTTAATGAAGACGATTTTCAGAAATCCTTGGAACAGTATCTTCTACATCCACCCAAACAAAACAAGGTTCTCAGGCAAAATGACCATCAAGAAAAACTTTTgaatacaaaagaaaaggtCAAATCAGATCTGGAGGCCAATAGAACCTTGGATGGAATAGAAGACAcgtatttcacttttaaaaggACTCTTTTGGATGGATCTCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCAAATAAACCATCCACTTCTGGTTCTTATTGGGATACAGTTGAAAGTGAAAATGAGGTTGGCAGCACAATTCCTTCCCAAGGACACCTGGACACCTATGTGTTGGATCCATCTGTTTCCCATGATCAGCTTTTTAGCATTATTGACTATTCCCCAAGCTGGGCATTTGAAGGGTCAGAAATTAAGgTTATCATTTCTGGACGATTCTTAAGAAGCCAACATGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGTGAGGTGGAAGTGCCAGCAGAGATCATCGCAAAAGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAGGTGCGAGAATTTGATTTCCAAATCAACTATACTCGAGAAGTCAACAATGCAGGTGAGAATAGAGGCAGCTCTTTTGATACTTTTAGTATACGATTTAAAGAACTGTTGTCCCTGGGGCTTGCCTTTCCTCAGAATTCAGATTCAATCAGTGTAAGTGATAATCTCAACTGA 1965 0.3847 MAETRHYVLSSQLDIKQIVSEAQHRWLRPAEICEILSNYKKFQIASEPAHMPTSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLDEELSHIVLVHYRLVKGTKANSTCAKENEESLPYAQQIDKSMPKTEMNTSLPSTLHPHGYQVPSQTIDTSMNSAQASEYEEAESALNNHASSEFYSFLKLQLPVEKIKAQPADSYCPNDQEKLPVIPGMNYISLTQGNKIKDIHNVGLTYESPKPFVFSSWEGILENNAGSQHLPFQPLFPETQLDTMGINSNFSQGDEIMMPHLTTGIAKQHENGSLIQAEGNWQVYGVNSLRVSSWPIDSVYSGLTCEVNCSNREQEVNEDDFQKSLEQYLLHPPKQNKVLRQNDHQEKLLNTKEKVKSDLEANRTLDGIEDTYFTFKRTLLDGSPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGSYWDTVESENEVGSTIPSQGHLDTYVLDPSVSHDQLFSIIDYSPSWAFEGSEIKVIISGRFLRSQHEAEQCKWSCMFGEVEVPAEIIAKGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQINYTREVNNAGENRGSSFDTFSIRFKELLSLGLAFPQNSDSISVSDNLN 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2706 654 Pfam IPT/TIG domain 519 594 IPR002909 -
Ssu5g2706 654 SMART CG_1_2 18 136 IPR005559 GO:0003677
Ssu5g2706 654 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 645 - -
Ssu5g2706 654 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Ssu5g2706 654 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 645 - -
Ssu5g2706 654 Pfam CG-1 domain 21 133 IPR005559 GO:0003677
Ssu5g2706 654 SUPERFAMILY E set domains 519 604 IPR014756 -
Ssu5g2706 654 Gene3D Immunoglobulins 512 607 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2706 Ssu-Chr5 72507442 72512071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2706 1 636 CAMTA Transcription Factor Family AT5G64220 40.217 2.19e-135 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2706 K21596 - gmx:100798875 1153.66