Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2705 ATGCAATCATTCCAGAGAAAACAACTAAAGGAATATGGTGATGACAAATTTGGAATATCTGATGAACATGCTCTTTCACTTGTAAAAGTGAATGTGAAATCACACAAGTCTGGGCCACGCAATGAGCCTGTCCATGCTGCTGCAATTCGAATCCAGAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGATTTTTTGATGATTCGGCAACGTATTGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAAAACTATAGGAAGATAACTTGGTCCGTTGGAATCTTAGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCGGAGGCCAATTCTGAGGGAGCTATGATACAAGATGTATGTTCCACAGAGGATGACTATGATTTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGGTTGCAGAAAGCCCTAGCCAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGCAGTTTTAACAATTCAGAAGAAACAAGAGAATTCGGTAACCTCACTGATGTTGAAGCATTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAG 660 0.4106 MQSFQRKQLKEYGDDKFGISDEHALSLVKVNVKSHKSGPRNEPVHAAAIRIQNKFRSWKGRKDFLMIRQRIVKIQAHVRGHQVRKNYRKITWSVGILEKVILRWRRKGSGLRGFKSEANSEGAMIQDVCSTEDDYDFLKEGRKQTEQRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHDSSFNNSEETREFGNLTDVEALLDEDIFMPTAT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2705 219 Gene3D - 42 92 - -
Ssu5g2705 219 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 216 - -
Ssu5g2705 219 ProSiteProfiles IQ motif profile. 67 91 IPR000048 GO:0005515
Ssu5g2705 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 94 IPR027417 -
Ssu5g2705 219 Pfam IQ calmodulin-binding motif 45 64 IPR000048 GO:0005515
Ssu5g2705 219 Pfam IQ calmodulin-binding motif 69 88 IPR000048 GO:0005515
Ssu5g2705 219 ProSiteProfiles IQ motif profile. 45 73 IPR000048 GO:0005515
Ssu5g2705 219 SMART iq_5 66 88 IPR000048 GO:0005515
Ssu5g2705 219 SMART iq_5 43 65 IPR000048 GO:0005515
Ssu5g2705 219 PANTHER ETHYLENE-UPREGULATED PROTEIN ER1, PUTATIVE, EXPRESSED-RELATED 1 216 - -
Ssu5g2705 219 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2705 Ssu-Chr5 72504624 72506292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2705 2 219 CAMTA Transcription Factor Family AT2G22300 64.286 1.11e-82 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2705 K21596 - gmx:100798875 392.119