Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2701 ATGCCAAACAGCATCGAGTCCCTTCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACCCGAATGGATTCCCTTCAAACCTTCGTGTCCCAATCCATCCAATCCCACACGCTCCTCACCCACCACCAAATGACCACCGTCTCCCACGAGATCCTCGCCGCCATTCGCCACGTCATCACCAACGGCGCCGCCCTCGTCGCCGCCTCGGAAAACATTCTCCCCCCTTCGGAGAACCCAGCGTTGGACGATTCTCCGAAACTCGACGGCGACAGCGAAACCGTGGTGGAGCTCGACGCGATGGAGCTGCTCGCGAAGCACCTTCACTTCTGCGAGGTGTGCGGGAAAGGGTTCACGCGCGACGCGAACCTGCGGATGCACATGCGCGCGCACGGGGACGAGTTCAAGACCCCGGAGGCGCTGGCGAGCAGGGCGCGTGGGGAGACGCGCCCGAAGGCGACGCGGTTTTCGTGCCCCTTCGAAGGTTGCAACCGGAACAAGATGCACAAGAAGTTCAGGCCCTTGAAGTCCGTGTTCTGCCTGAGGAACCACTTCAAGAGGAGCCACTGCCCCAAAACGCTGTCGTGCGAGCGCTGTCGGAAGAAGAGCTTCGCGGTGCTCTCGGACCTGAGGAGCCACGTGAAGCAGTGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGAGAAAGGACAAGTTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCCGCGCTTGAAGAGGAGAAAGAGACTCCGGTGGCGGCGGCGGAAGGGTTGGGGAAGCAAAATGATGACGGTGGTTTGAATGGGTTGCCTGAAGGGTTCTTTGATGGATTGGATGATTTTGGGTTTGGTTCCATTGGAAACAACTGTTCATAG 894 0.594 MPNSIESLHVSLRNLSQLSTRMDSLQTFVSQSIQSHTLLTHHQMTTVSHEILAAIRHVITNGAALVAASENILPPSENPALDDSPKLDGDSETVVELDAMELLAKHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALASRARGETRPKATRFSCPFEGCNRNKMHKKFRPLKSVFCLRNHFKRSHCPKTLSCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPALEEEKETPVAAAEGLGKQNDDGGLNGLPEGFFDGLDDFGFGSIGNNCS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2701 297 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Ssu5g2701 297 SMART c2h2final6 193 214 IPR013087 -
Ssu5g2701 297 SMART c2h2final6 108 130 IPR013087 -
Ssu5g2701 297 SMART c2h2final6 155 188 IPR013087 -
Ssu5g2701 297 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 8 75 - -
Ssu5g2701 297 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 87 284 - -
Ssu5g2701 297 Gene3D Classic Zinc Finger 108 137 - -
Ssu5g2701 297 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 75 IPR044300 GO:0010044|GO:0010447
Ssu5g2701 297 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 284 IPR044300 GO:0010044|GO:0010447
Ssu5g2701 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Ssu5g2701 297 SUPERFAMILY beta-beta-alpha zinc fingers 105 133 IPR036236 -
Ssu5g2701 297 Pfam Zinc-finger of C2H2 type 109 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2701 Ssu-Chr5 72426285 72427178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2701 81 294 C2H2 Transcription Factor Family AT1G34370 49.772 2.18e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g2701 zf-met 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2701 - - pvu:PHAVU_002G256900g 503.827