Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2699 ATGTGTCTGGTTTTTTGTCCTGCAACCAGGACATTGAGTCAAAACAATCTCAGTGGGACCATTCCTGAATCACTTGTCAGTCTTCCAAGCTTGGTCAATGTTATGCTAGATTCAAATGATCTGAGTGGCCAAATCCCAGAGCAGTTATTTAAAGTTCTTAAATACAATTTCACCggaaataatttgaattgtgGTGTCAATTACAATCATCCTTGCGAATCAGATAATGCAGATCAAGGTTCATCCCATAAACCAAAAGTTGCCCTCATAGTTGGAATTGTTATAGGGTTAGTTGTTATCCTTTTCCTTGGTGGTCTGCTGTTCTTTTGGTGCAAAGGTAGACACAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCTTGGAGAGAACTACAGATAGCTACAGACAATTTCAGtgagaaaaatgttttaggACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTTTTACGGCTGATTGGGTTTTGTACTACCCCAACTGAGCGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTAGCCTATCGTCTAAGAGAACTCAAACCTGGGGATCCTGTTCTGGATTGGCCTACAAGAAAACGAGTGGCTCTGGGAACCGCTCGTGGCTTAGAATATCTTCACGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGACTTTGGTTTGGCAAAGTTGGTCGATGTTCGAAAAACTAACGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAGTCTTCGGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGAGCAATAGACTTTTCACGTTTAGAAGAGGAAGATGATGTGCTGTTACTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCGATTGTTGACCGCaacctaaataaaaattacaacatACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTCTGTACGCAAGCCACACCAGAGGACCGTCCACTAATGTCCGAGGTTGTAAGAATGCTAGAAGGAGAGGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCGGTCTATAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATGA 1434 0.41 MCLVFCPATRTLSQNNLSGTIPESLVSLPSLVNVMLDSNDLSGQIPEQLFKVLKYNFTGNNLNCGVNYNHPCESDNADQGSSHKPKVALIVGIVIGLVVILFLGGLLFFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGDPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2699 477 Gene3D Phosphorylase Kinase; domain 1 123 230 - -
Ssu5g2699 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Ssu5g2699 477 SMART serkin_6 154 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2699 477 CDD TM_EGFR-like 85 119 - -
Ssu5g2699 477 Pfam Protein kinase domain 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2699 477 Gene3D Transferase(Phosphotransferase) domain 1 231 448 - -
Ssu5g2699 477 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 477 - -
Ssu5g2699 477 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Ssu5g2699 477 PANTHER LRR RECEPTOR-LIKE KINASE 11 477 - -
Ssu5g2699 477 SUPERFAMILY Protein kinase-like (PK-like) 134 429 IPR011009 -
Ssu5g2699 477 SUPERFAMILY L domain-like 12 64 - -
Ssu5g2699 477 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2699 477 Gene3D Ribonuclease Inhibitor 9 80 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2699 Ssu-Chr5 72409008 72413804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2699 11 477 Receptor kinase-like Gene Family AT5G10290 84.368 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu5g2699 Pkinase 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2699 - - gmx:100793416 865.914