Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2689 ATGTTTTCAGAGGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGACGCTGTTCAAGAGGCTCTCCTGTTGAATGAATCTGAATTGCATGGCCGTCAGTTGAAGGTTTTGCCAAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACACGGCATATGGTTTTAGAAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 381 0.4383 MFSEVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYTAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2689 126 CDD RRM_II_PABPs 5 70 - -
Ssu5g2689 126 Gene3D - 2 78 IPR012677 -
Ssu5g2689 126 SMART rrm1_1 3 70 IPR000504 GO:0003723
Ssu5g2689 126 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 124 - -
Ssu5g2689 126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 68 IPR000504 GO:0003723
Ssu5g2689 126 SUPERFAMILY RNA-binding domain, RBD 5 93 IPR035979 GO:0003676
Ssu5g2689 126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 74 IPR000504 GO:0003723
Ssu5g2689 126 PANTHER - 3 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2689 Ssu-Chr5 72310270 72311284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2689 5 45 Eukaryotic Initiation Factors Gene Family AT2G36660 41.463 5.12e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2689 K14396 - gmx:100789721 258.07