Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2688 ATGCTACTCACGTGTCACTACCACCCTTTCCCACATTCACCTTCCTTAACCCACTCACCCTGCACCACAAATAGAAACTGcaacctctctctctccttttcgATCGTCACCTCGCGCCCCCTCCACCTCACCGCGCACCGGTTCAGTTCCCTCACAACACGCGCCGATCACTTTAGCCTCCGATCCGAACATGTCGCTGGCGATTCCAATTTCGATTCTCTCCTCTCGCTCCTCGAATTCTCGTGCCTGCTCTCTTCCGCCGTCGTGTCCGCCGCCGCTGCTGCGGTCGCGGGTTTCAAGAAGGAGCTCCTGGTGGGGATCGGTAGCAGAGCCGCTCCGTTCGGCGTCGCCATGCTGGTGGCTGGGGTTTTGATCGGCGCGTGGATTCGGAGACGGCAGTGGAGGCGCGTGTGTGTGGAGACGGGGAAGGGCGGGTTGGAGGTGAACTTGCTCGAGAGGATTGAGAAATTGGAGGAGGATTTGAAGAGTTCCGCGACGGTTGTTAGGGTTTTGTCGAGACAGCTCGAGAAATTGGGGGTTAGGTTTAGGGTTACGAGGAAGGCGTTGAAGGACCCCATAGCTGAGACTGCAGCTCTGGCGCAGAAGAATTCTGAGGCTGCTAGAGCATTAGCAGTGCAATCAGACATTTTGGAGAAGGAACTTGGTGAAATTCAACAGGTTTTACTAGCAATGCAGGAACAACAGCGAAAACAACTTGATCTGATTCTTGCAATTGGGAAGGCTGGTGAGAAGGGATTACTCGAGAGTCAAGACAAACTAAGGTCGGAGAATTTGTTGAACTCTGTCCAGTTTTGTGTTTCTGCCTCCAGTCAGCCACAACCTGCAATTTCTCCCAGGCTGCCACGGCAAGTTTTCTTGACCCTTCTCTCCAAGGTAACAGGTACTCTAATTACAAGCCATTGGGGTGGAAATGCCATTGTGGTGACCACTTCTTCAACCCTTAGAAATTGTACACATGGTTATGGAGATTATTATCCTCACCTTGATTTGTAA 1014 0.5108 MLLTCHYHPFPHSPSLTHSPCTTNRNCNLSLSFSIVTSRPLHLTAHRFSSLTTRADHFSLRSEHVAGDSNFDSLLSLLEFSCLLSSAVVSAAAAAVAGFKKELLVGIGSRAAPFGVAMLVAGVLIGAWIRRRQWRRVCVETGKGGLEVNLLERIEKLEEDLKSSATVVRVLSRQLEKLGVRFRVTRKALKDPIAETAALAQKNSEAARALAVQSDILEKELGEIQQVLLAMQEQQRKQLDLILAIGKAGEKGLLESQDKLRSENLLNSVQFCVSASSQPQPAISPRLPRQVFLTLLSKVTGTLITSHWGGNAIVVTTSSTLRNCTHGYGDYYPHLDL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2688 337 Coils Coil 217 237 - -
Ssu5g2688 337 PANTHER TRANSMEMBRANE PROTEIN 16 259 - -
Ssu5g2688 337 Coils Coil 154 174 - -
Ssu5g2688 337 PANTHER TRANSMEMBRANE PROTEIN 16 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2688 Ssu-Chr5 72264962 72275556 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2688 66 250 Eukaryotic Initiation Factors Gene Family AT5G65250 58.421 2.14e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2688 - - gsj:114413091 391.349