Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2687 ATGGATGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCTGACGAGGGAGAGATGGAAGGAGACGTTGACATGTCCACCGCCGACGATGACGCCGCCGTGAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAAGAGGAGGCCGCCGCTCTTCGTGAGATGCAAGCCAAGGTCGAGAAGGAGATTGGCAACGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGACGCTGTTCAAGAGGCTCTCCTGTTGAATGAATCTGAATTGCATGGCCGTCAGTTGAAGGTTTTGCCAAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACACGGCATATGGTTTTAGAAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 648 0.4877 MDEEEHEVYGGEIPDEGEMEGDVDMSTADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGNVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYTAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2687 215 MobiDBLite consensus disorder prediction 1 24 - -
Ssu5g2687 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Ssu5g2687 215 Gene3D - 24 159 IPR012677 -
Ssu5g2687 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Ssu5g2687 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Ssu5g2687 215 CDD RRM_II_PABPs 88 159 - -
Ssu5g2687 215 PANTHER - 1 213 - -
Ssu5g2687 215 Coils Coil 30 64 - -
Ssu5g2687 215 SUPERFAMILY RNA-binding domain, RBD 77 182 IPR035979 GO:0003676
Ssu5g2687 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2687 Ssu-Chr5 72255754 72262080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2687 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 32.895 7.69e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2687 K14396 - gmx:100789721 406.757