Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2684 ATGGAACGGTATGagataattaaagatattgggTCAGGGAACTTTGGTGTGGCAAAGCTGGTAAAGGAAAAATGGAGTGGTGAATTATTCGCTATCAAGTTTATTGAGAGAGGCTTCAAGATTGATGAGCACGTGCAAAGGGAGATTATAAATCATAGGTCCTTGAAGCATCCCAATATCATTAGATTTAAAGAGGTGTTACTTACTCCAACTCATCTTGCAATAGTCATGGAATATGCTGCCGGGGGAGAACTGTTTGAAAGAATATGCAGCGCTGGGAGATTCAGTGAGGACGAGGCGAGATATTTCTTTCAGCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCACAGAGATCTTAAGCTGGAAAACACACTTCTAGATGGAAGCTCAGCACCCCGACTTAAAATCTGCGACTTCGGTTACTCAAAGTCATCTGTTCTGCACTCCCAGCCAAAATCTACTGTAGGAACCCCTGCCTATATTGCACCAGAGGTTTTGTCAAGAAGAGAATATGATGGGAAGGTCGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGTTGGTTGGTGCATATCCCTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTCCACTATTCTATTCCAGACTACGTTCGTATCAGTAAAGAGTGTAGGCACCTTTTGTCTCGAATATTTGTGTCCAACCCGGAAAAGAGAATAACCATACCGGAGATTAAAATGCACCCTTGGTTCCTAAAGAATTTGCCATTAGAATTTATGGACGAGGGGGAAGGGGTGTTGCAAAATGATGTCAATGACTCATCTCAAACTCAAAACATTGAAGAAATATTGTCCATAATTCAAGAGGCTCGGAAACCGGGTGAGGGACCAAAAGTTGGTGAGCAGTTTGTGGGGGGCAGCATGGACCTTGATGATATTGATGCAGATGCTGACATCGATGATATTGAGACAAGCGGTGATTTTGTTTGTGCATTGTGA 1026 0.4191 MERYEIIKDIGSGNFGVAKLVKEKWSGELFAIKFIERGFKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVSNPEKRITIPEIKMHPWFLKNLPLEFMDEGEGVLQNDVNDSSQTQNIEEILSIIQEARKPGEGPKVGEQFVGGSMDLDDIDADADIDDIETSGDFVCAL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2684 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Ssu5g2684 341 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2684 341 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu5g2684 341 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Ssu5g2684 341 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Ssu5g2684 341 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
Ssu5g2684 341 PANTHER SERINE/THREONINE KINASE 2 335 - -
Ssu5g2684 341 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 335 - -
Ssu5g2684 341 CDD STKc_SnRK2 3 259 - -
Ssu5g2684 341 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2684 341 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2684 Ssu-Chr5 72187957 72190674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2684 3 270 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 4.89e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu5g2684 Pkinase 1.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2684 K14498 - gmx:100807981 654.44