Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2678 ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACGATTTGTCCACCAACagATGAACAGAGTCCGAGGAACAGCCACGTGTATGGCCGGGAGTTCCAGTCCATGCTGGAAGGACTAGACGAAGAAGGGTGCGTAGAAGAACCAGGGCACCACGTTGAGAAGAAACGACGACTAAGCGTGCATCAGGTGAAGGCCTTGGAGAAGAACTTCGAGGTAGAGAACAAGCTGGAACCTGACCGAAAGGTGAAGCTCGCGCAAGAGCTTGGCTTGCAACCGAGACAAGTGGCCGTTTGGTTCCAAAACCGCCGAGCCAGatggaaaacaaaacaattggAAAGAGATTACGGCGTCCTCAAAGCCAACTACGAAACACTTAAACTTAACTACGACACCCTCCAACAGAACAACGAAGCCTTACTCAACGAGATTAAGGAATTGAAATCAAGGCTGCTGCAAGGGGAGAACACCGAAAGCGATGGTTCGGTGAAGGAAGAGATGATAACGCTGCAGGATAGTAACCCGCTGTGTGAAACCGCCATTCCCGGATCCGACTCTAAGGAGTTGAGTTACGAGTGTTTCAACAAGAGTACTGACGAGGTTGGGGGCGGTTCGGTGTTTCCTGCGGACTTGAAAGACGGTTCGTCCGACAGCGACTCTAGCGCGATCTTGAACGaggacaacaacaacaacgcgGCGATTTCTTCGTCCGGGGTTCTGCAAAGTCACGGCCTCCTGTCGTCGATGAACTGCTTCCAGTTCCAGAAACAGTACCAGCAGGCGCAGTACGTGAAGATGGAGGAGCACAATTTCCTCAGCGCGGACGAGGCCTGCAATTTCTTCGCGGACGAACAAGCGCCCACGCTGCCGTGGTACTGTTCAGAGGAGTGGaattaa 903 0.5039 MKRLGSSDSLGALMTICPPTDEQSPRNSHVYGREFQSMLEGLDEEGCVEEPGHHVEKKRRLSVHQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYETLKLNYDTLQQNNEALLNEIKELKSRLLQGENTESDGSVKEEMITLQDSNPLCETAIPGSDSKELSYECFNKSTDEVGGGSVFPADLKDGSSDSDSSAILNEDNNNNAAISSSGVLQSHGLLSSMNCFQFQKQYQQAQYVKMEEHNFLSADEACNFFADEQAPTLPWYCSEEWN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2678 300 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Ssu5g2678 300 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Ssu5g2678 300 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Ssu5g2678 300 SUPERFAMILY Homeodomain-like 39 114 IPR009057 -
Ssu5g2678 300 SMART HOX_1 55 116 IPR001356 GO:0003677
Ssu5g2678 300 Gene3D - 52 119 - -
Ssu5g2678 300 MobiDBLite consensus disorder prediction 207 226 - -
Ssu5g2678 300 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Ssu5g2678 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 292 IPR045224 GO:0003700
Ssu5g2678 300 Coils Coil 118 159 - -
Ssu5g2678 300 CDD homeodomain 57 113 IPR001356 GO:0003677
Ssu5g2678 300 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Ssu5g2678 300 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Ssu5g2678 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2678 Ssu-Chr5 71995082 71996390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2678 1 300 Homeobox Transcription Factor Family AT2G22430 49.691 4.24e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g2678 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2678 K09338 - gmx:100796213 504.212