Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2673 ATGGCTCCTCATCCTGAAGAACCACCTCCTCTGAATCAAACCAAACACCATGGCAACCCAACACCTTCCCCTCATAAACCAGCAGTTCCAGGTGGGATTGAAACGTCAAAGCCTGTGAAGTTACCCCCCCTCCCACCTCACCTAGAAGAACATCATTTTCATAGCCATGTTCTTCGACTCGCCCTGGTTGTCATGGCATGCATGGTTGGCGTGGTCATGTTTCTCTGCACCGTGTCCGTACTCATAAGGTACTTTTACTCGAGGCGATATAGCCGTGACCAAAACAGAAGGCACGCCCCAATACTGTTCGACGTTAACGGAGATTCTCCCGCCTCGGATAACGATGATGACGTGGACGAAGAGGAGTTAGCGGTTGTCCACCCCATTTGGTACATCCGTACAGTGGGTCTCCAACAAACGCTCATAGACTCCATCACCGTCTTCAAGTACCGAAAAGGCGAAGGAGTCATTGACGGCACCGAGTGTTCCGTCTGCCTCGGCGAGTTCGAACAGGACGAGAGTCTCCGGTTGTTGCCCAAGTGCAGCCACGCCTTCCACATCCCTTGCATTGACACGTGGCTCAGGTCGCACAAAAATTGCCCCTTGTGTCGTGCGCCTGTGGTCCGTGACGGCGCCGGTGGCGCAGAAATCAGAGCCGTTGGTCAGAATAATCAGACGGATCCAAACGTCTCCGATCATCAGACGACTCAGGACCCAGAGGCCCAGGTGGAGAATTCTGATCACGAGAGTGGTGAAGTGAGGGTCGAAGATGGTGATGAGTCCGGTGTGTCTTCGGCGCCGGAAGAGGAAACACAGTCTCTGAGGAGGTCGGCTTCGATGGATTCGCCTTCTGCTTCGATGGTGTCGCGTGATGTGGTGGTGGATTTAGATACCCACTTTGGTGAAAAAGTGAGTTCAAGTGGGAAGGATGTGAGTGTAGCGAAGCATGGTAGTGGGGGTTCAAGTTCAACAACCATGGGCAAGGTGGGTTCAATTGGACGTGCGTTGCAAAAGAGGCCAATCTTAATGACAGGATCGTTATCACATAACAGGAAATTTTTGTCCTCTAGACACAGTAGGAGCCAGAGTTCAACTCTTCCCTTGTAA 1107 0.5221 MAPHPEEPPPLNQTKHHGNPTPSPHKPAVPGGIETSKPVKLPPLPPHLEEHHFHSHVLRLALVVMACMVGVVMFLCTVSVLIRYFYSRRYSRDQNRRHAPILFDVNGDSPASDNDDDVDEEELAVVHPIWYIRTVGLQQTLIDSITVFKYRKGEGVIDGTECSVCLGEFEQDESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVVRDGAGGAEIRAVGQNNQTDPNVSDHQTTQDPEAQVENSDHESGEVRVEDGDESGVSSAPEEETQSLRRSASMDSPSASMVSRDVVVDLDTHFGEKVSSSGKDVSVAKHGSGGSSSTTMGKVGSIGRALQKRPILMTGSLSHNRKFLSSRHSRSQSSTLPL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2673 368 MobiDBLite consensus disorder prediction 348 368 - -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 265 286 - -
Ssu5g2673 368 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 302 368 - -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 242 261 - -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 1 43 - -
Ssu5g2673 368 SMART ring_2 162 203 IPR001841 -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 221 241 - -
Ssu5g2673 368 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 34 360 IPR044675 -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 316 330 - -
Ssu5g2673 368 PANTHER RING-H2 FINGER PROTEIN ATL54 34 360 - -
Ssu5g2673 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Ssu5g2673 368 MobiDBLite consensus disorder prediction 221 287 - -
Ssu5g2673 368 SUPERFAMILY RING/U-box 146 209 - -
Ssu5g2673 368 CDD RING-H2_PA-TM-RING 161 204 - -
Ssu5g2673 368 Pfam Ring finger domain 161 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2673 Ssu-Chr5 71883363 71884469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2673 61 275 C3H Transcription Factor Family AT1G72220 39.056 4.25e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2673 - - gmx:102663026 404.831