Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2672 ATGAGAGTAGTGGGCTTTCGAACCTATGTTTTGAGCACTGAATCGCACTTCCTTTCTGCACCAACAATTGGACTCGTGTTATATTGCGTTCCAACTATTGTTAGCTTTAGTTGTCATCTAGAAgGATTAAGTTTCACAGAAGCCGACAGGAGATTGCAGGAAATTGGGCCAAATGTTCCACTTGGGTATTCTTTTCCAAGATGGTGGCATCTTCTATGGAACGCTCTTTTCCACCCTTTCAATATCATTCTGATTGTTCTGTCTGTTCTGTCATTCATTACCCTTGACAATCCAAATGGAGCCATCATGCTCGTATTGGTTTTCATCAGTGTCACTCTCCGTTTCTATCAGGAATACAACAGCTCAAAAGCAGCGATGAAGCTTTCAGAATTTGTAAGATGCCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATAGTTCAAGTTGATCACAGGGATATAGTTCCAGGTGACATTGTGATTTTTGAACCTGGTGACCTCTTTCCTGGAGATGTCAGGCTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAACTGCTGATATCAGAGAAGATCACAGCACTCCTTTATTAGATTTAAAGAACATTTGCTTTATGGGCACAAACGTGGTATCGGGTACTGGAACAGGCTTAGTGGTTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGACTTTGAAAAGGGTCTCAGATGGATATTTTACTTGCTTATTTCTGTTATGCTAGCAGTTGTAACCATCATGTTTGTGATAAATTACACTACATCTCTTAATTTGAGCGAAAGCATTCTTTTTGCCATCTCAGTAGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTAAAGAGTTTAACATCAATACGCGAGATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGTACTCTTACAATGAATCATGCCATCATGGTTAATAATCTTGACTGCAGGGGTTTACCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGTCTGATCAGAAGTATCCTCTGGATGATGCAATTCTGGCATATGTATATTCAAATGGATTCAGATTTCAACCTTCAAAGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCACAAGTATTTGGCAGGTTCATGGTAACAAAAGGAGCACTGTTAGAAGTCATGAGAGTTTGTTCTTACATTGAGAATTTCGATAAAGATGAAATTTCCACCTTCACTTCATATGATTATCAGCGGATTTTAGATCTCTCAGAAGATTTGAGCAATGAGGGGTTAAGGATTATAGGAGTAGCTATAAGGAAGCTGGAAATGCAGCAAACAAGCATAGCAAGTAATGGAAGCAAGAGAGAAGACGAGGATGTTGAAAGAGACATGGTGTTCCTCGGCCTAATAACATTTTTCGACCCACCCAAGGACTCAGCAAAGCAAGCACTGTGGCGTTTGTCTGAGAAGGGAGTGAAAGCCAAGGTTCTAACTGGTGACTCACTCTCCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAGCACCACTCATGTAATAACAGGTCCTGAACTAGAGCAACTTGACCAAGACACTTTCCACGAGACAGTTAAAAGAGCCACAGTATTAGCCCGTCTCACCCCAATTCTGAAACTCCGAGTGGTGCAATCCTTGCAAACAATTGGAAACCACGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCCGATGTAAGCATTTCTGTGGACTCAGGTGTAGCCATTGCCAAAGACATGGCAGATATTATCTTACTTGAGAAAGATCTCAACGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAGTACGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGTTATTCAAGTATGAGCCCTTAACTTCCAGACAGCTTCTTACTCAGAATTTTATTTACAGTGTGGGACAGATTGCCATCCCTTGGGACAAGATGGATGAAGAGTATCTTAAGACACCTCAGAAGTCCTCAGAGAGAGGCTTGGGCATGTTCATATTGTGGAATGCACCAGTGTGCACCCTTTGTGATGTGTCAACACTTTTGTTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTCCTCTTTCAGACCCTCATCATCCACTTGATCAGGACAGAGAAAATCCCTTTCATCCAGGATGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTGACATCTGCAATTGGAATTGCAATTCCATTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTACCTCTCTCATATTTCGGATTTTTGGCAGTTCTTTTTCTGGGGTATTTTACAGTTGGCCAAGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGATGGCTTTGA 2685 0.413 MRVVGFRTYVLSTESHFLSAPTIGLVLYCVPTIVSFSCHLEGLSFTEADRRLQEIGPNVPLGYSFPRWWHLLWNALFHPFNIILIVLSVLSFITLDNPNGAIMLVLVFISVTLRFYQEYNSSKAAMKLSEFVRCPIKVQRCAGRVVQKELIVQVDHRDIVPGDIVIFEPGDLFPGDVRLLSSKQLVVSQASLTGESWTTDKTADIREDHSTPLLDLKNICFMGTNVVSGTGTGLVVSTGSNTYMSTMFSKVGKKKPPDDFEKGLRWIFYLLISVMLAVVTIMFVINYTTSLNLSESILFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIREMGSMDILCIDKTGTLTMNHAIMVNNLDCRGLPQEKVLRYAFLNSYFKSDQKYPLDDAILAYVYSNGFRFQPSKWRKIDEIPFDFIRRRVSVILETEDRHSQVFGRFMVTKGALLEVMRVCSYIENFDKDEISTFTSYDYQRILDLSEDLSNEGLRIIGVAIRKLEMQQTSIASNGSKREDEDVERDMVFLGLITFFDPPKDSAKQALWRLSEKGVKAKVLTGDSLSLTTRVCREVGISTTHVITGPELEQLDQDTFHETVKRATVLARLTPILKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAADVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLLFKYEPLTSRQLLTQNFIYSVGQIAIPWDKMDEEYLKTPQKSSERGLGMFILWNAPVCTLCDVSTLLFLWFYYKAYTDVTQKFFHSAWFIEGLLFQTLIIHLIRTEKIPFIQDVASWPVIFSTVVTSAIGIAIPFTPIGKVMGFSLLPLSYFGFLAVLFLGYFTVGQVVKRLYILVYKRWL 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2672 894 ProSitePatterns E1-E2 ATPases phosphorylation site. 352 358 IPR018303 -
Ssu5g2672 894 Gene3D - 362 538 IPR023299 GO:0000166
Ssu5g2672 894 SMART Cation_ATPase_N_a_2 29 96 IPR004014 -
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 384 397 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 263 279 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 742 755 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 797 818 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 692 707 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 762 778 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 847 868 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PRINTS Magnesium-transporting ATPase signature 280 299 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 SUPERFAMILY Calcium ATPase, transduction domain A 144 249 IPR008250 -
Ssu5g2672 894 SUPERFAMILY Calcium ATPase, transmembrane domain M 38 891 IPR023298 -
Ssu5g2672 894 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 343 541 IPR023299 GO:0000166
Ssu5g2672 894 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 36 893 IPR006415 GO:0015444|GO:0015693|GO:0016021
Ssu5g2672 894 PANTHER CATION TRANSPORTING ATPASE 35 893 - -
Ssu5g2672 894 Gene3D - 99 846 - -
Ssu5g2672 894 Pfam Cation transporter/ATPase, N-terminus 40 91 IPR004014 -
Ssu5g2672 894 Pfam haloacid dehalogenase-like hydrolase 346 648 - -
Ssu5g2672 894 Gene3D - 347 671 IPR023214 -
Ssu5g2672 894 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 600 713 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2672 894 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 384 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2672 894 SUPERFAMILY HAD-like 525 682 IPR036412 -
Ssu5g2672 894 SFLD p-type atpase 332 684 IPR044492 -
Ssu5g2672 894 Pfam E1-E2 ATPase 144 329 - -
Ssu5g2672 894 Gene3D - 134 238 - -
Ssu5g2672 894 SFLD Haloacid Dehalogenase 332 684 - -
Ssu5g2672 894 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 35 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2672 Ssu-Chr5 71855385 71867529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2672 41 757 Primary Pumps ATPases(2) AT1G10130 26.561 4.66e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2672 K01531 - gmx:100795153 1543.48