Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2660 ATGTCGAAACCCTGGGGCAACATCGGAGCCTGGGCCGCGGATTCCGAGCTGGCCGAGGCCGAGGAGCGCGAGGCCCAGGCCGCGGCCGCGGCCGCCGAGGCCCAAAACTTCCCCAGCCTCAAGGAGGCCGCGAACGCCAAGCccaagaagaagaaaggcatGACGGTTACGCTTTCCGAGTTCAACCGAACCGGCGAGAACCAGGGCCTAACGCGCGACGAGATGCTCGCGCTTCCTACCGGTCCCAAGGAACGTTCCGCCGAGGAAATGCAGTTCAACCGCCTCGGCGGTGGTTTCTCCTCCTTCGACCGCTCCGGCCCCCGCTCGCGCGACCGCGACGGCGGCAACGGGGACGGTTCCTGGGGCGGCGGAGGGAGAAGATCCTACGGCGGAGGCTTCGACGACGAACGCAGGGGTCCGAATCCTAGGGTTTCGGAACTCGATCAGCCGTCGCGGGCCGACGAGGTGGACAATTGGGCGTCGGTGAAGAAAACCCTCCCCTCCTTCGATTCCGGCCGCCAGAATCGCTacggcggcggcggcggtggCGGTTTTGGCGGCGCGTCGAGGGCCGATGGGGTGGACAATTGGGCGGTTGGTAAGAAGCCTGTTACTCCCGTTAGATCTTCTAATTTCGGTTCCGGTTTTCGCGATTCCGGCGTGGAGCCTGATCGCTGGACGAGAGGCGGTCCGCTGCGCGAGATTGAGCGGATGGAGCGGCCGAGGCTGGTGTTGGATCCGCTGAGAGGGGACGGTTCGGTGAACGAGGCTCCGGCGAGGGCGAATAAGGCGAATCCATTCGGCACGGCGCGGCCGAGGGAGGAGGTGTTGGCTGAGAAGGGGTTGGAttggaagaagatggattcggAGATTGAGGCGAAGAAGACGAGCCGGCCCACAAGTGCACATTCTAGCAGGCCTTCCAGTGCTCAGTCGAATCGCTCCGAGGGTCCCGGGTTGCAGGGGATCGATGCTGTGGTGAAATCGAGGCCCAAGGTGAACCCCTTTGGGGATGCAAAGCCCAGGGAGGTTCTGCTGGGCGAGCGAGGCATGGATTGGCGGAAGATTGATCTTGAGTTGGAGCATCGCGCTGTTGAgagGCCTGAGacaatggaagaaaaattattaaaagaagaaattgataatttgaaGAAGGAACTTGAGAAAGAGTCTACAATAAATTCAAACAAGGAATCTGCGGATGAGGCTGGTGGAGACCAAAGCAGTACACATGCCATATTACGACAGAAAGAGAAGGAGCTGGAATTTCTTATCCGTGATTTGGATGACAAAGTTCGTTTTGGGCAGAAAGCCGTTGAAAGGCCAGGTTCATCGGCAGGAAAGTCTACTGGTTTTTCTGATAGGCCACCTTCTAGATCTGGCTCATTTGAGGATTCTAGAAGTGTGGATTTTACAGAAAGACCTCGATCTCGTGGTACAGGAGATATGTGGATGCGTCCTAGTGATGACAGAAGACAGTTTCAAGGTAGCAGGGAAAGGGGATGGTTTTCTGGTAGCAGAGACTTGAATAGGTCAAGGTCAAGAGAGAGATGGTGA 1557 0.5485 MSKPWGNIGAWAADSELAEAEEREAQAAAAAAEAQNFPSLKEAANAKPKKKKGMTVTLSEFNRTGENQGLTRDEMLALPTGPKERSAEEMQFNRLGGGFSSFDRSGPRSRDRDGGNGDGSWGGGGRRSYGGGFDDERRGPNPRVSELDQPSRADEVDNWASVKKTLPSFDSGRQNRYGGGGGGGFGGASRADGVDNWAVGKKPVTPVRSSNFGSGFRDSGVEPDRWTRGGPLREIERMERPRLVLDPLRGDGSVNEAPARANKANPFGTARPREEVLAEKGLDWKKMDSEIEAKKTSRPTSAHSSRPSSAQSNRSEGPGLQGIDAVVKSRPKVNPFGDAKPREVLLGERGMDWRKIDLELEHRAVERPETMEEKLLKEEIDNLKKELEKESTINSNKESADEAGGDQSSTHAILRQKEKELEFLIRDLDDKVRFGQKAVERPGSSAGKSTGFSDRPPSRSGSFEDSRSVDFTERPRSRGTGDMWMRPSDDRRQFQGSRERGWFSGSRDLNRSRSRERW 518
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2660 518 MobiDBLite consensus disorder prediction 300 318 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 466 497 - -
Ssu5g2660 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 1 518 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 273 299 - -
Ssu5g2660 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 518 IPR010433 GO:0003743
Ssu5g2660 518 MobiDBLite consensus disorder prediction 436 518 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 387 414 - -
Ssu5g2660 518 Coils Coil 373 400 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 446 465 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 221 246 - -
Ssu5g2660 518 Coils Coil 15 35 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 397 411 - -
Ssu5g2660 518 Pfam Plant specific eukaryotic initiation factor 4B 1 501 IPR010433 GO:0003743
Ssu5g2660 518 MobiDBLite consensus disorder prediction 504 518 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 16 339 - -
Ssu5g2660 518 MobiDBLite consensus disorder prediction 130 159 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu5g2660 Ssu-Chr5 71547005 71554940 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2660 1 518 Eukaryotic Initiation Factors Gene Family AT3G26400 55.456 2.60e-152 444
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2660 - - gmx:100784238 791.956
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2660 5 71547005 71554940 Ssu5g2660 5 71547005 71554940 ECH