Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2659 ATGGGAGTGTTCACATTTGTCCTCCGCAACTCCGGCGGCGAATGGACCGCCAAGCAACACTCTGGCGACATCGAGGCCTCCGCCGACTCCACCTTCGATCTCCAACGGAAGCTCGTGCAAGCCGCTCTCGCCGTTGATTCCTCCGGCGGCGTTCAGTCCTCTTTCTCTTATGTGTCCCCTTCCTCTGCGGTGTTCCAGGTGATAGTGGGTGGTGCAGTATTCGTTGGAGGTGGTGGGGCTGTTGCAGCTGCACCTGCTGGGGGTGCTGCCCCAGCTGGCGATGCTGCTCCGGCTGctgagaaaaaggaagaaaaggtgGAGGAAGAGTCGGATGATGATATGGGATTGGGACTGTTTGATTAG 363 0.5565 MGVFTFVLRNSGGEWTAKQHSGDIEASADSTFDLQRKLVQAALAVDSSGGVQSSFSYVSPSSAVFQVIVGGAVFVGGGGAVAAAPAGGAAPAGDAAPAAEKKEEKVEEESDDDMGLGLFD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2659 120 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 120 IPR044252 GO:0003735|GO:0005840
Ssu5g2659 120 MobiDBLite consensus disorder prediction 106 120 - -
Ssu5g2659 120 MobiDBLite consensus disorder prediction 84 120 - -
Ssu5g2659 120 Pfam 60s Acidic ribosomal protein 71 119 - -
Ssu5g2659 120 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2659 Ssu-Chr5 71524928 71526009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2659 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 77.941 7.71e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2659 K02942 - gmx:100804776 143.665