LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2656	ATGTTAGGGGAAGAGACTAACAACGACCGCGGCGGCGGCCACCGGAGAACGCACTCCCGATCAGTTTCCTGGACGGACCGGTCTCCGGTCAGCCGGAAACCGCCGCGACCCCTTCAGCCCCTTTCCATCAACAAACGCAGCGTGGAGGGGTGGCCGAGCGCCGGGTGCGACGATCTCTGCGTTTGGCCTCTTCCCCCAACCCCAAGAGGGTCAACAAAACCCTCGGGATCAGATTCGGGTGAAGTGTTTCCGTTTAGGAGGGAGAAGTTGGCGTTCTACGACAAGGAATGTTCCCGAATCGCTGAGCACGTGTACTTGGGGAGCGACACGGTGGCCAAGAGCCACGAGCTTCTGCGGCGGCACGGGATCACGCACGTGCTCAATTGCGTGGGCTTCGTTTGCCCCGAGTACTTCAAGGCCGACTTCGTGTACAAAACGCTCTGGCTGCAGGACAGTCCCTCGGAGGACATAACCAGCATTCTCTACGACGTGTTCGATTACTTCGAGGATGTTCGGCAGCAGGGCGGGCGCGTGCTCGTGCACTGCTGTCAAGGGGTTTCGCGATCCACCTCGTTGGTCATCGCTTACCTCATGTGGAGGGAGGGCCAGAGCTTCGAGGACGCGTTTCACTTCGTGAAGAACGCGCGTGGCGTCACCAACCCCAACATGGGTTTCGCGTGTCAGCTGTTGCAGTGTCAGAAGAGGGTGCACGCTATGCCTGCGAGTCCCACTTCTCTTCTCCGGATGTATAGGATGGCTCCTCATTCTCCCTACGATCCTCTTCATCTCGTTCCGAAGATGGTTGACCACCCTTGCGCACGCGCGCTTGATTCTCGTGGGGCGTTTATTGTGCACGTTCCTTCTGCTATGTATGTGTGGACTGGGAAGGCGTGTGCGTCGGTGATGTGTTGTAATGCGAGATCAGCGGCTGTTCAGGTTGTGCGTTATGAGAGGGCCACGGGGAAGATTGTTAGTGTGGTTGAGGATCAAGAGCCGAAGGAGTTTTGGGTTGCTCTTTCTAACAAGGAAGTGTTGGGGGAGGTGAAGAATGCGGAAAGAGTGGAGATTGATGTGGGAATTCGTCCGAGGAGAGTTGAGGAGTACGATTTGGATTTTGGGATTTTTCACAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTGCTTTGTCTAATGCTGGATCAGAAAATCGCCTTCCTGCAAGGGAAAATGGTTGGGGAAGATTGACAAGGAAGCTTGCTAGTGGTATCATGAAAGGGTTGTTCACATCCTCTAAGTGCTGTGAGTCAAGTGTGAACTTGGAAGAGGAAAATCAACACAAGAATGTTGATTCTTTGCCACCACCTTCTAACCATGTGTGTGGTTCGCGCGAATGTTTTCTAGATAATGGCTCGGAGAGGGCAAAAGACAATGTTCAAGTCATGGATCAATTTGTTGTTCCTAGTGTTGGTTCGTCACTGCCACCATCTCCTCATTCTTTTGCTTGTTTTCTAAGAAGCAGCCCCAAATTCAGTTCCAAGTCGCCAACAGTTTCACCCACCAGTTCTGATTATGCCAGTTCCTTTACATGTTCACCTTCATCCACTGACTTGTCCATTGTGTCTTCTTGGCAGCCATCGCCTTCTGGCCTGGAATCAGCTGAACCCTTTTATGTTAAAGTTGCGTCTCCCTCGGAGAGTTGCTCTTTACTTCAGAAAGAAGCTGTCTCTTCATCTTCAGAGGCATTTTTGGCTAATCACACCTTGGTAGGGGCAAAGTCCAGTTTGTCACGCAAAGGGTCTTGCCCCTCCATTGCAGAGCGCAGAGGGAGTAACCCGCCACCTCGCATGCTGCTGCCCTCGGCCAGCGAATCGTCCCGCGCAAGCAAGATCCGGGTAAGATCCAAGTCATTCTCATTGCCTGCCTTGGATGATACTTTGATGAAGGAAGTTAATTGCAAGCAATCCGACCGCGAAAACAGTGGAAAATGGTTAACTTGA	1977	0.5271	MLGEETNNDRGGGHRRTHSRSVSWTDRSPVSRKPPRPLQPLSINKRSVEGWPSAGCDDLCVWPLPPTPRGSTKPSGSDSGEVFPFRREKLAFYDKECSRIAEHVYLGSDTVAKSHELLRRHGITHVLNCVGFVCPEYFKADFVYKTLWLQDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHFVKNARGVTNPNMGFACQLLQCQKRVHAMPASPTSLLRMYRMAPHSPYDPLHLVPKMVDHPCARALDSRGAFIVHVPSAMYVWTGKACASVMCCNARSAAVQVVRYERATGKIVSVVEDQEPKEFWVALSNKEVLGEVKNAERVEIDVGIRPRRVEEYDLDFGIFHKALAGGVVPPFALSNAGSENRLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNLEEENQHKNVDSLPPPSNHVCGSRECFLDNGSERAKDNVQVMDQFVVPSVGSSLPPSPHSFACFLRSSPKFSSKSPTVSPTSSDYASSFTCSPSSTDLSIVSSWQPSPSGLESAEPFYVKVASPSESCSLLQKEAVSSSSEAFLANHTLVGAKSSLSRKGSCPSIAERRGSNPPPRMLLPSASESSRASKIRVRSKSFSLPALDDTLMKEVNCKQSDRENSGKWLT	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2656	658	CDD	DSP	97	231	-	-
	Ssu5g2656	658	Gene3D	Severin	248	345	IPR029006	-
	Ssu5g2656	658	SMART	dsp_5	96	235	IPR020422	GO:0006470\|GO:0008138
	Ssu5g2656	658	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	33	626	-	-
	Ssu5g2656	658	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	90	238	IPR029021	-
	Ssu5g2656	658	SUPERFAMILY	Actin depolymerizing proteins	242	343	-	-
	Ssu5g2656	658	MobiDBLite	consensus disorder prediction	587	622	-	-
	Ssu5g2656	658	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	96	238	IPR020422	GO:0006470\|GO:0008138
	Ssu5g2656	658	PANTHER	MKPA PROTEIN	33	626	-	-
	Ssu5g2656	658	Gene3D	Protein tyrosine phosphatase superfamily	84	238	IPR029021	-
	Ssu5g2656	658	ProSitePatterns	Tyrosine specific protein phosphatases active site.	180	190	IPR016130	GO:0016311\|GO:0016791
	Ssu5g2656	658	MobiDBLite	consensus disorder prediction	1	22	-	-
	Ssu5g2656	658	MobiDBLite	consensus disorder prediction	1	44	-	-
	Ssu5g2656	658	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	155	216	IPR000387	GO:0016311\|GO:0016791
	Ssu5g2656	658	Pfam	Dual specificity phosphatase, catalytic domain	104	234	IPR000340	GO:0008138\|GO:0016311

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2656	Ssu-Chr5	71500562	71502538	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2656	37	132	Protein tyrosine phosphatase (PTP) family	AT3G55270	48.148	1.03e-25	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2656	-		-	gmx:100782633	1048.88