Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2627 ATGAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACATTATTTTGTCATGATGCAGTTCATAATCAACTTGTTCAAGTCACTTGGAGCTCTGTAAGACTAGTCAGTTCCACAACTAGAGAGCTTCGGAATGAATGGCATGCACCATCAGGCTATGCAGTAAATGTAGCTACAGCAAATGCTACCCAGATATCTTACTTGCTATGTGCCCTTGGTGATGGCCATCTCTTAAACTTTATGTTCAACACAAGTACTCGTGAGTTAACAATAGGAAAAAGTCAAGAGAGTGGATGTGAAAATTGTAATTCCTTGGATCATCCCTTCCATCAACAACTCTACAACTACATCAAGCAACAAGCCATACTCTGTGAAGCTATTGAACCCATCAAGCAGGGATCGTTTCATGTAAAGCTGTTGAACCCATCAATTCCTGGGTTATTTGACACTCTAAAATTGCTATTCCTTGGATCATCCCTTTACAAAGTGGATTTTGTTTGTGGCAATACCATGTGGTCTGCCATAGGTGTTAGGTTAGAGAGTGGGGCTTCAGAgAGTAGAAACGACCCCATCAAGTTGTTGAAGCTGCTAGACATATTCCGAGTCTTAGACGGCCTAAGACTAAAATTCAACCTACTTTTAAATGAGAAAGCTTGCAAAGAAATTAGAACTGTGACAAAGGATCTTGTGAATGGAGTTGTCAGCGGTGCTGGTGAGATTTTTTGGCAACTTCCAGCACATGTTAAGTTACTAAGGCCAAGTTCTCCTCCCACAGATGGCAGCGTTCCTAGGGTGGTGCCTATGAGGATATCAATTTGGCTAAGAGCTCATGAACATTACAAGAACTATTATGCAGCACTTTATTTGAGGAATAGCTGGGAAATGATTCTACCTATTCTTATAGTTCGAAAAGCCTTGCTATCATCCTCCATGACCGGCCAAGATTTGGCTGCTGGCTGTGATAAGCAAAGGGGTGAATGCAAGGAAGGAAGTGGTGGATCAGAAGAAAGGGTTTTTGAGAATGAAGACTACGTCTATACCAACTCCTTGCCTTAG 1077 0.4178 MNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTWSSVRLVSSTTRELRNEWHAPSGYAVNVATANATQISYLLCALGDGHLLNFMFNTSTRELTIGKSQESGCENCNSLDHPFHQQLYNYIKQQAILCEAIEPIKQGSFHVKLLNPSIPGLFDTLKLLFLGSSLYKVDFVCGNTMWSAIGVRLESGASESRNDPIKLLKLLDIFRVLDGLRLKFNLLLNEKACKEIRTVTKDLVNGVVSGAGEIFWQLPAHVKLLRPSSPPTDGSVPRVVPMRISIWLRAHEHYKNYYAALYLRNSWEMILPILIVRKALLSSSMTGQDLAAGCDKQRGECKEGSGGSEERVFENEDYVYTNSLP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2627 358 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 190 274 - -
Ssu5g2627 358 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 280 323 - -
Ssu5g2627 358 PANTHER EXOCYST COMPLEX PROTEIN EXO70 190 274 IPR004140 GO:0000145|GO:0006887
Ssu5g2627 358 PANTHER EXOCYST COMPLEX PROTEIN EXO70 280 323 IPR004140 GO:0000145|GO:0006887
Ssu5g2627 358 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 5 89 IPR018846 -
Ssu5g2627 358 Gene3D Exocyst complex component Exo70 182 274 - -
Ssu5g2627 358 SUPERFAMILY Cullin repeat-like 193 273 IPR016159 -
Ssu5g2627 358 Pfam Exo70 exocyst complex subunit 192 272 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu5g2627 358 Gene3D - 1 73 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2627 Ssu-Chr5 71127558 71138130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2627 184 275 EXO70 exocyst subunit family AT1G51640 45.652 1.66e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2627 K10610 - gmx:100777459 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2627 5 71127558 71138130 Ssu5g2627 5 71127558 71138130 ECH