Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2619 ATGGTCTTTAACTTTGCAGCTATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTTTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGTTGTAGGAcattgctaatgtacacacgtGGAGCTACAAGTGTGAGATGTTCCTGCTGTCAAACTGTAAACCTTGTTCCAGCATCCAGTCAAGTAGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTCTTTGTCACTATATTACTAATGTCAGTATGAACAATGGAAGGCTTCCAATCCCTGCCCATAGATCCAATGGGACAACCAATGCTGGAACATTACCTTCTACTTCAACATCAATGCCCCAATCTCAAAGTCAAACTGTAGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA 552 0.4167 MVFNFAAMQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCQTVNLVPASSQVAHVHCGNCRTTLMYPYGAPSVKCALCHYITNVSMNNGRLPIPAHRSNGTTNAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2619 183 PANTHER LSD1-LIKE PROTEIN 8 181 - -
Ssu5g2619 183 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 11 41 IPR005735 -
Ssu5g2619 183 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 50 80 IPR005735 -
Ssu5g2619 183 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 88 117 IPR005735 -
Ssu5g2619 183 Pfam LSD1 zinc finger 91 115 IPR005735 -
Ssu5g2619 183 Pfam LSD1 zinc finger 14 38 IPR005735 -
Ssu5g2619 183 Pfam LSD1 zinc finger 53 77 IPR005735 -
Ssu5g2619 183 MobiDBLite consensus disorder prediction 130 154 - -
Ssu5g2619 183 PANTHER PROTEIN LSD1 8 181 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2619 Ssu-Chr5 71002483 71013239 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ssu5g2619 zf-LSD1 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2619 - - gmx:100776394 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2619 5 71002483 71013239 Ssu5g2619 5 71002483 71013239 ECH