Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2616 ATGAAACAGTTGAAATTGGCTGCTGAATCTCAAGCCAGAGAGGATAATCCTCTTAGACATAAGCCAGAAATGGAAAACACACTTGAGTCTTCTGGCAGTCCGCGACATAGAAAGATATCAGCCAGATGGGATCCAGTTGAAGCATGTCGGCCTATAGTTGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAAGACACACTTGGCTACCTAGCTAAGGTTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCACTTTGCTGGGTACCACCTTGCCCTCTTAAAGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAATTGACTTGCTTCAGAACAGGGAACCCATTAGAAAGAAACTTAGGGGAAGGAAACGAAAACGTAAAAAGCAGTCAAAGATGGGCACGGGTTGGAGAACTGCTAAATCAGATTCTGAAGCTAATGTTGCTTCTGAACCTGATGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAACACTTTCAGCAATATACGAATGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAACATGGAAAAGTTAGTCACAATCACCAGCAGAGATGGGAGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGATTTGGAAACAGGAGCACTAGGAAGTGGTTTTCCTAAGACATCATCCTTAAATAAGAATGATTCAGATAGGTATGCCCTGTCTGGCTGGAATCTGAATAACGTCCCACGACTGCCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCACATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGATCCAAAAGTATGGTATGGAGTACCCGGAAGCCATGCTCCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCCGAGGGGGTGCCTGTACATCGCATTGTCCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGTTTGTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATTTGCTCAGGAAGCCGTGCATGCCCTTGCAAAGCTAACTCTTCATGGAaaagaaaatctaaaatatataaaatggagAAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGATTGTCTTCCAACTCATTTAAAGATGCTGAAGATGGACAATGGGTTTGATTTTTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCCATAGGTTGCAAGTGCTCTCCCGACAGTTATTCTTGTCTCAGACACTCAATTTTGTTTTGCTCATGTGAAATGGACAAAAGATTTGTTCTGTTTCGTTATACTATGAATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCACATGCTATTGAGGTTTGGGCAAATAGAAGCACTGGAATGGTTTCTGCTAATGCCAAGGATGCTTGCATGTATAAACAAGATGTGGAGAGTGCCATGTGCCAAACCCAGAGTTACAAAGAAGGGAAAAGCTCAACTTATTGTGCAGGAATTAATGATaagtcaaattcaaatatacctAGCAGTTCTTACAGCCACATTTCTGCAGAGTTAGTCCACTCAGAGTTTCACCATGAAACTTTTAGTGCACCATATGGCACTAAAGATTGTCATAAAgataatttgaatgaaaaatatttggtCATGGACAATGAAGTTAAGGTGGAGAAGGGAGGTTCTGTGGATTTGAATATTGATGTCATGTCTGGTGAACCTGAAAATGATTTTCTGCATGCTGCTGATTACCATCATAATAAGGATGTTCCATATGTGGAAAAAGTCTGCTATGCAGAAACCAGAAAGGAACAAGACAACATGAAACCTGGGGCTGCTTGTATTGCTTCCTTGGAGAAAGAATTTTCATCATGTTCAAGGGATGTTCAAAATTCTTGTACACTCGATGGTTGTAAATTGTTTGGGGTGGATCTGCATATGCATTCTGATTCAGGAGAGCAACTCAACAGTGTATTTAAAATGGGTGATGTCGAAACCTCCAATACAAGTATATCTTTGATAAACCAAAGCTTCTTAATGCAGAAGTTTGGTATTTCTGTTGAGCCTGTAAACCTGGGCTCTGTTATGTGTGGAAAGCTGTGGTGCAATAAGCATGCAATATATCCCAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCACCAAGAATTTGTAGCTATGTTTCTGAAGTCTGCGATGCTGGATTTCTTGGGCCTCTTTTCAAGgTTACCATGGAAGAACATCCAAGTGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGAAAACAGTTCTTGACAGACTAAATCATGAAATCAAGAGGCAAAGGGGTCAAGGTGAAAGAGAACTTCCTCCCTTGGAACTTCTGGAAAGCATTAACGGTCACAAAATGTTTGGATTCCTGTCACCATCCATTATTCAGGCCATTGAAACTCTGGATCCCAATCATCAATGTGTTGAGTACTGGAATCACAAAGAGGTTGTCTCTGAATCTTCAGGCAGTGCCATTGATGACTGTAAGTTCAGTCATGGTTCAAGTAACTCTCTAGGTGATGTCAAGACCAAGTTTTTTGGTGTCGGTTTGATAAAGCAGGAGCAAGATAGCATCAGAGGAAGTTGTGattcttttgaagagatgaaatTGGTGCTACAAGGATTCTTGAAAAAGGCAAGTCCTGATGAATTAAGTGCCATGCATAAGTTATTCAGCTCTGATGCACAATTCACTAAATGGAGAGTGGCATTTGTAACGCTGATAGAGGAAATCCAGAAAGCTTGTGCATAA 3183 0.4037 MKQLKLAAESQAREDNPLRHKPEMENTLESSGSPRHRKISARWDPVEACRPIVDEAPVFYPTIEEFEDTLGYLAKVRPQAEPYGICRIVPPLCWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPIRKKLRGRKRKRKKQSKMGTGWRTAKSDSEANVASEPDEKFGFQSGSDFTLKHFQQYTNVFKDCYFGLNDANEHGKVSHNHQQRWEPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKTSSLNKNDSDRYALSGWNLNNVPRLPGSALCFEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRIVQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWFVHGQNAAELYSLQCRKTSLSHDKLLFGFAQEAVHALAKLTLHGKENLKYIKWRSACGKDGVLTKAVKTRITMEKERLDCLPTHLKMLKMDNGFDFFEERECFSCFYDLHLSAIGCKCSPDSYSCLRHSILFCSCEMDKRFVLFRYTMNELSTLVEALEGESHAIEVWANRSTGMVSANAKDACMYKQDVESAMCQTQSYKEGKSSTYCAGINDKSNSNIPSSSYSHISAELVHSEFHHETFSAPYGTKDCHKDNLNEKYLVMDNEVKVEKGGSVDLNIDVMSGEPENDFLHAADYHHNKDVPYVEKVCYAETRKEQDNMKPGAACIASLEKEFSSCSRDVQNSCTLDGCKLFGVDLHMHSDSGEQLNSVFKMGDVETSNTSISLINQSFLMQKFGISVEPVNLGSVMCGKLWCNKHAIYPKGFKSRVKFFSILDPPRICSYVSEVCDAGFLGPLFKVTMEEHPSEAFTNTSADKCWKTVLDRLNHEIKRQRGQGERELPPLELLESINGHKMFGFLSPSIIQAIETLDPNHQCVEYWNHKEVVSESSGSAIDDCKFSHGSSNSLGDVKTKFFGVGLIKQEQDSIRGSCDSFEEMKLVLQGFLKKASPDELSAMHKLFSSDAQFTKWRVAFVTLIEEIQKACA 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2616 1060 Gene3D Cupin 41 413 - -
Ssu5g2616 1060 SUPERFAMILY Clavaminate synthase-like 259 450 - -
Ssu5g2616 1060 MobiDBLite consensus disorder prediction 129 165 - -
Ssu5g2616 1060 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Ssu5g2616 1060 Pfam F/Y rich C-terminus 870 957 IPR003889 GO:0005634
Ssu5g2616 1060 Gene3D - 814 952 - -
Ssu5g2616 1060 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1059 - -
Ssu5g2616 1060 SMART fyrc_3 872 967 IPR003889 GO:0005634
Ssu5g2616 1060 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1059 - -
Ssu5g2616 1060 SMART JmjN_1 55 96 IPR003349 -
Ssu5g2616 1060 Pfam F/Y-rich N-terminus 819 863 IPR003888 GO:0005634
Ssu5g2616 1060 ProSiteProfiles FYR domain FYRN motif profile. 808 866 IPR003888 GO:0005634
Ssu5g2616 1060 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Ssu5g2616 1060 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Ssu5g2616 1060 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Ssu5g2616 1060 Pfam jmjN domain 57 90 IPR003349 -
Ssu5g2616 1060 SMART cupin_9 263 429 IPR003347 -
Ssu5g2616 1060 MobiDBLite consensus disorder prediction 7 39 - -
Ssu5g2616 1060 SMART fyrn_3 822 866 IPR003888 GO:0005634
Ssu5g2616 1060 MobiDBLite consensus disorder prediction 1 39 - -
Ssu5g2616 1060 MobiDBLite consensus disorder prediction 129 145 - -
Ssu5g2616 1060 ProSiteProfiles FYR domain FYRC motif profile. 868 958 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2616 Ssu-Chr5 70955047 70963176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2616 810 995 JUMONJI Transcription Factor Family AT1G30810 54.839 2.40e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu5g2616 JmjC 8e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2616 - - gmx:100784581 1941.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2616 5 70955047 70963176 Ssu5g2616 5 70955047 70963176 ECH