Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2614 ATGGCTTTGGTCTCTcaatttcttgttcatttggccTTATTAATCCTCCTCCTCGCGCTTGAGCTACCCAACCTTTTGATTGGTGTATCATCTGCCACTTTAAGCATCACCACAGATAGAGAAGCCTTGATCTCATTGAAGTCTCAACTGAGTAATGAGACTCTTAACCCCTTATCTTCTTGGAACCATAATTCATCCCTTTGCACTTGGACTGGTGTCCTGTGTGACAGGCATGGCCAAAGAGTGACCGGCCTGGATCTTTCAGGCTTGGGACTCTCAGGTCACTTGAGTCCTTATATTGGTAACCTCTCCTCTCTTCAGTCCCTCCAATTGCAAAATAACCAACTCACAGGAGTGATTCCTGACCAAATTGGCAACCTATTCAGCCTGAGAGTTCTAAATATGAGCTCTAACATGTTAGAAGGAAATCTTCCTTCAAACATCACCTATTTGAATAAGCTCCAGATTCTTGATTTATCCTCAAACAAGATTGTCAGCAAGATTCCTGAGGACATCAGCAGCTTGAAAAAACTTAAGGTTTTGAAACTGGGAAGGAATAGCCTCTACGGTGCAATCCCAACATCTCTGGGAAACATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGCTGGATTCCCAGTGACTTGGGTAGGCTCCATGACTTGATTGAGCTTGATCTCACTCTCAACAATCTCACTGGGACTGTTCCACCTGCTATATACAACTTATCTTCCCTTATCAACTTGGCCTTAGCTGCAAACTCTTTGTTGGGTGAGATTCCTCAGGATGTTGGTCACAAACTTCCAAAACTCCTAGTGTTCAATTTCTGCTTCAATAAGTTCACAGGTAGAATTCCAGGGTCATTGCACAACCTCACCAACATTCGGGTCATTCGCATGGCTTCCAACCATTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCACATGTATAATATTGGTTATAACAGGATAGTGAGTTCAGGTGTGAGAGGTCTAGACTTCATTACTTCTTTGACAAACAGCACTCACCTGAACTTTCTGGCAATTGATGGCAATATGCTGGAAGGTGTAATTCCTGAAACCATTGGCAATCTATCCAAGGATCTCTCAAAATTATACATGGGAGGGAATCGTTTCAATGGAAGCATACCCTCCTCCATTGGTCGTCTACGTGGCTTGAAGTTGTTAAACTTAAGCTACAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAGAGGAACTACAAGAGCTATCTCTGGCTGGAAACAAGATATCAGGAGGTATTCCAAACTCTCTTGGTAATCTCCTGAAGTTAAACCAGATTGATTTGTCAAGAAACAAACTTGTGGGGGAAATACCTATCAGTTTTGGGAATTTGCAAAACCTGCTTTACATGGACTTATCCAGCAACCAACTCAATGGAAGCATACCTATGGAAATCCTCAATCTCCCAACTTTGAGCAATGTGTTGAACTTGTCTATGAACTTTTTGAGTGGATCAATACCTCAAGTTGGGAGATTGGTTAGTGTTGCCTCCATTGACTTTTCTAGCAACAAATTGTATGGTGGCATCCCCAGCTCATTCAGCAATTGTCTCAGcttagaaaaattgtttttggcCCGGAATCAGCTGTCAGGTCCCATTCCAAAGGCTCTTGGAAATGTGAAAGGATTGGAAACTTTGGACCTGTCCTCCAACCAACTCTCTGGAACCATTCCTATTGAACTTCAAAATCTACATGTCCTTAAACTCTTAAACCTCTCGTACAACGATTTAGAAGGAGCCATTCCTAGTGGTGGGGTTTTCCAAAATCTCACTGCTGTCCATTTAGATGGCAATAGAAAACTCTGCTTGCATTTCCCATGCATGCCTCATGgccatggaagaagaaatgTAAGACTTTACATCATCATAGCTATCGTTGTAACATTAATACTATGTCTCATAATTACCTTACTACTATACATAAAGAACAAAAGGGTGAAGGTAACAGCAGCAGCATCAGCATCTGAAGAGCTAAATCCTCATGCACCAATGGTCTCTTATGACGAGCTTCGTCTGGCAACTGAGGAGTTCAGCCAGGAAAACTTAATAGGAGTTGGCAGCTTTGGCTCAGTTTATAAAGGCCATCTAAGTCATGGAACTACTGTTGCTGTGAAAGTTCTGGACACCCTAAGAACTGGCTCTTTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTGATCACGTCATGCTCTAGTGTTGactttaaaaacaatgattttctGGCTCTGGTCTATGAGTACCTGTGTAACGGTAGCTTGGAAGATTGGATCAAGGGGAGAAGAAAGCATGCAAACGGCAATGGGTTGAACCTGATGGAGAGACTGAATATTGCTATTGATGCTGCGTGTGCATTGGATTACCTCCACAACGATAGTGAACTTCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTTTATTGGATGAAGACATGACAGCAAAGGTGGGTGACTTTGGATTGGCTAGGTTGCTGATTCAAAGATCAACTAGTCAAGTTTCCATTAGCTCCACTCATGTCCTTAGGGGCTCAATTGGTTACATACCTCCAGAATATGGATGGGGAGACAAACCATCTGCAGCTGGTGATGTATATAGTTTTGGGATAGTGTTACTAGAGCTCTTCTCTGGCAAAAGCCCAACAGATGAGTGTTTCACAGGAGGCCTAAGCATAACAAGATGGGTGCAATCAGCATTCAAAGACAAGACAGTGCAAGTCATTGACCCTCAGTTGTTGTCCCTCATTTTTCATGATGACCCTTCTGAGGGACCAAATCCACAACTCTATTGTCTGGATGCAATTGTAGGAGTTGCCATATCTTGCACTGCAGACAATCCAGATGAACGCATTGGCATTAGAGATGCTTTACGCCAACTAAAATCTGCTAGAGACTCTCTTTTGAAACTGTCTAATGAGAGTCCTACTAGAGAAACCAAGCGTTACTTCCACGTTACTGTAAAGTGA 3075 0.4163 MALVSQFLVHLALLILLLALELPNLLIGVSSATLSITTDREALISLKSQLSNETLNPLSSWNHNSSLCTWTGVLCDRHGQRVTGLDLSGLGLSGHLSPYIGNLSSLQSLQLQNNQLTGVIPDQIGNLFSLRVLNMSSNMLEGNLPSNITYLNKLQILDLSSNKIVSKIPEDISSLKKLKVLKLGRNSLYGAIPTSLGNISSLKNISFGTNFLTGWIPSDLGRLHDLIELDLTLNNLTGTVPPAIYNLSSLINLALAANSLLGEIPQDVGHKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMASNHLEGTVPPGLGNLPFLHMYNIGYNRIVSSGVRGLDFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKDLSKLYMGGNRFNGSIPSSIGRLRGLKLLNLSYNSISGEIPHELGQLEELQELSLAGNKISGGIPNSLGNLLKLNQIDLSRNKLVGEIPISFGNLQNLLYMDLSSNQLNGSIPMEILNLPTLSNVLNLSMNFLSGSIPQVGRLVSVASIDFSSNKLYGGIPSSFSNCLSLEKLFLARNQLSGPIPKALGNVKGLETLDLSSNQLSGTIPIELQNLHVLKLLNLSYNDLEGAIPSGGVFQNLTAVHLDGNRKLCLHFPCMPHGHGRRNVRLYIIIAIVVTLILCLIITLLLYIKNKRVKVTAAASASEELNPHAPMVSYDELRLATEEFSQENLIGVGSFGSVYKGHLSHGTTVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGRRKHANGNGLNLMERLNIAIDAACALDYLHNDSELPVVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTSQVSISSTHVLRGSIGYIPPEYGWGDKPSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSITRWVQSAFKDKTVQVIDPQLLSLIFHDDPSEGPNPQLYCLDAIVGVAISCTADNPDERIGIRDALRQLKSARDSLLKLSNESPTRETKRYFHVTVK 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2614 1024 CDD STKc_IRAK 710 997 - -
Ssu5g2614 1024 Pfam Protein kinase domain 705 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2614 1024 SMART LRR_sd22_2 151 174 - -
Ssu5g2614 1024 SMART LRR_sd22_2 567 593 - -
Ssu5g2614 1024 SMART LRR_sd22_2 423 449 - -
Ssu5g2614 1024 SMART LRR_sd22_2 175 201 - -
Ssu5g2614 1024 SMART LRR_typ_2 471 495 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 296 320 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 567 590 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 151 175 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 223 247 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 423 447 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 399 422 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 591 616 IPR003591 -
Ssu5g2614 1024 SMART LRR_typ_2 103 127 IPR003591 -
Ssu5g2614 1024 Gene3D Ribonuclease Inhibitor 230 339 IPR032675 -
Ssu5g2614 1024 Coils Coil 989 1009 - -
Ssu5g2614 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Ssu5g2614 1024 SUPERFAMILY Protein kinase-like (PK-like) 686 996 IPR011009 -
Ssu5g2614 1024 ProSiteProfiles Protein kinase domain profile. 704 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2614 1024 Gene3D Ribonuclease Inhibitor 340 636 IPR032675 -
Ssu5g2614 1024 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 25 1003 - -
Ssu5g2614 1024 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Ssu5g2614 1024 Gene3D Ribonuclease Inhibitor 34 229 IPR032675 -
Ssu5g2614 1024 Gene3D Transferase(Phosphotransferase) domain 1 785 1018 - -
Ssu5g2614 1024 SUPERFAMILY L domain-like 37 333 - -
Ssu5g2614 1024 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Ssu5g2614 1024 SUPERFAMILY L domain-like 378 629 - -
Ssu5g2614 1024 PANTHER OS04G0122200 PROTEIN 25 1003 - -
Ssu5g2614 1024 SMART serkin_6 704 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2614 1024 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Ssu5g2614 1024 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Ssu5g2614 1024 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Ssu5g2614 1024 Gene3D Phosphorylase Kinase; domain 1 675 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2614 Ssu-Chr5 70887758 70890985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2614 38 1010 Receptor kinase-like Gene Family AT3G47570 42.714 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu5g2614 Pkinase 5.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2614 - - gmx:100783512 1726.45