Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2613 ATGGACTTATCCAGCAACCAACTCAATGGAAGCATACCTGTGGAAATCCTCAATCTCCCAACTTTGAGCAATGTATTGAACTTGTCAATGAACTTTTTGAGTGGGCCAATTCCTCAAGTTGGTAGATTGACTAGTGTTGCCTCCATTGACTTTTCTAGCAACCAATTGAATGGTGGCATCCCCAGCTCATTCAGCAATTGTCTCAGcttagaaaaattgtttttggcCCGGAATCAGCTTTCAGGTCCCATTCCAAAGGCTCTTGGAGATGTGAGAAGCTTGGAAACTTTGGACCTATCCTCCAACCAACTCTCTGGAACCATTCCTATTGAACTTCAAAATCTACTTGTCCTTAAGCTCTTAAACTTCTCGTACAATGATCTAGAAGGAGCCATTCCTAGTGGTGGAGTTTTTCAAAATCTCTCTGCTGTCCATTTGGAAGGCAATAGAAATCTCTGCTTAAATTTCTCATGCGTGCCTCACGgccatggaagaagaaatgTAAGACTTTACATAATCATAGCCATCGTGGTAACAATGATATTATGTCTCACAATTGGCTTACTGCTatatataaagaacaaaaaggcGAAGGTAGCAGCAGTAGCAGCATCTGAACAGCTAAAACCTCATGTACCAATGGTCTCTTATGACGAGCTTCGTCTGGCAACTGAGGAGTTCAGCCAGGTAAACTTATTAGGAGTTGGGAGCTTTGGCTCAGTTTATAAAGGTCATCTAAGTCATGGAACTACTGTTGCAGTGAAAGTTCTTGACACCCAAAGAACTGGCTCTTTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAGGCTGATCACGTCATGCTCTAGCGTTGACTTTAGAAACAACGATTTTCTGGCTCTGGTCTATGAGTACCTGTGTAATGGTAGCTTGGAAGATTGGATCAAGGGGAGGAGAAATCGTGCAAACAGAAGTGGGTTGAACCTTATGGAGAGACTGAACATAGCTATAGATGTTGCTAGTGCATTGGATTACCTCCACAATGATAGTGAAATCCCAGTTGTGCACTGCGATTTGAAGCCTAGCAACATTCTATTGGATGAAGACATGACAGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTGATTCAAAGATCAACTAATCAAGTTTCCATTAGCTCCACTCATGTCCTTAGGGGCTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGTGATGTATATAGTTTTGGTATAGTGTTACTGGAGCTCTTCTCTGGGAAAAGCCCAACAGATGAGTGTTTCACAGGAGGCATAAGCATAACAAGATGGGTGCAAGGTGCATTCAAAGACAAGGCAGTACAAGTCATTGACCCTCAGTTGTTGTCCCTCATTTTTCATGATGACCCTTCTGTGGGACCAAATCTACAACTCTATTGTCTGGATGCAATTGTAGGAGTTGCCATATCTTGCACCGCAGACAACCCAGATGGACGCATTGGCATTAGAGATGCTGTTCGCCAACTAAAAGCTGCTAGAGACTCTCTTTTGAAACAGTCTGATGAGAATCCTACTAGAGCTACCAAATCTTACTAG 1626 0.4157 MDLSSNQLNGSIPVEILNLPTLSNVLNLSMNFLSGPIPQVGRLTSVASIDFSSNQLNGGIPSSFSNCLSLEKLFLARNQLSGPIPKALGDVRSLETLDLSSNQLSGTIPIELQNLLVLKLLNFSYNDLEGAIPSGGVFQNLSAVHLEGNRNLCLNFSCVPHGHGRRNVRLYIIIAIVVTMILCLTIGLLLYIKNKKAKVAAVAASEQLKPHVPMVSYDELRLATEEFSQVNLLGVGSFGSVYKGHLSHGTTVAVKVLDTQRTGSLKSFFAECEAMKNSRHRNLVRLITSCSSVDFRNNDFLALVYEYLCNGSLEDWIKGRRNRANRSGLNLMERLNIAIDVASALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTNQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPTDECFTGGISITRWVQGAFKDKAVQVIDPQLLSLIFHDDPSVGPNLQLYCLDAIVGVAISCTADNPDGRIGIRDAVRQLKAARDSLLKQSDENPTRATKSY 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2613 541 Pfam Leucine rich repeat 46 104 IPR001611 GO:0005515
Ssu5g2613 541 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 1 526 - -
Ssu5g2613 541 SMART serkin_6 227 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2613 541 SUPERFAMILY L domain-like 1 158 - -
Ssu5g2613 541 PANTHER OS04G0122200 PROTEIN 1 526 - -
Ssu5g2613 541 Gene3D Ribonuclease Inhibitor 1 158 IPR032675 -
Ssu5g2613 541 Pfam Protein kinase domain 228 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2613 541 Gene3D Phosphorylase Kinase; domain 1 198 307 - -
Ssu5g2613 541 CDD STKc_IRAK 233 520 - -
Ssu5g2613 541 ProSiteProfiles Protein kinase domain profile. 227 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2613 541 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Ssu5g2613 541 ProSiteProfiles Leucine-rich repeat profile. 93 116 IPR001611 GO:0005515
Ssu5g2613 541 Gene3D Transferase(Phosphotransferase) domain 1 308 539 - -
Ssu5g2613 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Ssu5g2613 541 SUPERFAMILY Protein kinase-like (PK-like) 209 519 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2613 Ssu-Chr5 70876668 70878676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2613 3 530 Receptor kinase-like Gene Family AT3G47570 41.516 4.06e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu5g2613 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2613 - - gmx:100783512 927.161