Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2611 ATGGATTTTTTCATGCAATCTTTGTTACTCACTTTGATCACCTTAATTGCATCTATCTATATTTTGCAGAAAAGAAGAGGTGGCGCCAAAAGCCTGCCCCCAGGTAGTTTTGGGTGGCCCCTAGTGGGAGAAACCTACCAATTTTTGTTCAACAAGATTGAGCACTTCCTACAAGAGAGAGTTAAAAAGCACTCCTCAGAGATCTTCCACACAAACATACTAGGAGAGCCAACAGTGGTTTTTTGTGGCCCTGGGGCGAACAAATTTGTCTCCACCAATGAGACAAAGCTTGTCAAAGTTTGGTACATGAAGACTCAGCGCAGGCTCTTCAATATTCCTGATCAGACACATGCAGCTAAGCCAAAACAAGAAACAGCATCTGCTGCTCCAGTGAAGATCTTGGGGTTCATGAAACCTGAGGGACTAGTTAGGTACATGGGGAACAAAATTGAATCAATCATGCACGAACATTTGATGACACGCTGGGAAGGAAAAACAGAAGTGAGGGTGTACCCTTTGGTGAAGGCCTTTACCCTTACGCTGGTGTGCCAATTCTTCTTAGGCATTGATGAACCCCGTCATGTAGCCAAATTTGCCAGTGAGTTTGAGAACTTGTATCTTGGAATCTACTCTGTTCCTGTGAATTTCCCGGGCTCTACATACAGTAGGGCACTGAAGGCTGCGGCTGCAATAAGGAAAGAGATCCAATTTCTGATTAAAGAGAAGATTGATGCTTTGTCCAAGGGGCAAGTTGTGGATGACCTACTAGCACACATAGTTGGTGCTGAGCAGGGTGGAAAATATGTGCCGAGAATTGAAATAAGCAACATCATCATGGGGTTGATGAATTCCAGCCACATACCAATAGCTATTACTCTGGCTTTCATGATCAGACACATTGGACAGAGGCCTGACATCTACCAAAAGATCGTATCCGAGCACGCTGATATTACAAAATCCAAAGGATCTGCTACAGCACTAGATTGGGACAGCATACAGAAATTGAAATACACATGGGCTGTTGCACAGGAGACCATGAGACTCTACCCAATTGCACCAGGTGCATTCAGAGAGGTGATAACAGATATCACCTATGAAGGTTTTACTATTCCAAAGGGATGGAAGATCTTTTGGGCACTTATTGGAACAAATAAGAATCCCAAGTACTTTCATGACCCTGAAAGTTTTGATCCCTCAAGGTTTGAAGGGAATGTTCCTGCTCCATACACTTGCATACCCTTTGGAGCTGGACCAAGATCTTGCCCTGGAAAGGATTATACTCGGTTTGTGGTTCTCAATTTCATTCACATTCTTATAACCAAGTTCAAGTGGGAAGTTATACTTCCTGACGAGAAAGTTTCTGGTGCTTTGATACCTACCCCAGCAGAGGGAATTCCTATCCGTCTTCATCACTTTTAA 1419 0.4355 MDFFMQSLLLTLITLIASIYILQKRRGGAKSLPPGSFGWPLVGETYQFLFNKIEHFLQERVKKHSSEIFHTNILGEPTVVFCGPGANKFVSTNETKLVKVWYMKTQRRLFNIPDQTHAAKPKQETASAAPVKILGFMKPEGLVRYMGNKIESIMHEHLMTRWEGKTEVRVYPLVKAFTLTLVCQFFLGIDEPRHVAKFASEFENLYLGIYSVPVNFPGSTYSRALKAAAAIRKEIQFLIKEKIDALSKGQVVDDLLAHIVGAEQGGKYVPRIEISNIIMGLMNSSHIPIAITLAFMIRHIGQRPDIYQKIVSEHADITKSKGSATALDWDSIQKLKYTWAVAQETMRLYPIAPGAFREVITDITYEGFTIPKGWKIFWALIGTNKNPKYFHDPESFDPSRFEGNVPAPYTCIPFGAGPRSCPGKDYTRFVVLNFIHILITKFKWEVILPDEKVSGALIPTPAEGIPIRLHHF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2611 472 PRINTS P450 superfamily signature 340 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PRINTS P450 superfamily signature 412 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PRINTS P450 superfamily signature 302 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 SUPERFAMILY Cytochrome P450 30 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 11 470 - -
Ssu5g2611 472 Gene3D Cytochrome P450 23 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 414 423 IPR017972 GO:0005506|GO:0016705
Ssu5g2611 472 PANTHER CYTOCHROME P450 26 11 470 - -
Ssu5g2611 472 PRINTS E-class P450 group I signature 379 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PRINTS E-class P450 group I signature 339 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PRINTS E-class P450 group I signature 411 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PRINTS E-class P450 group I signature 293 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 PRINTS E-class P450 group I signature 421 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2611 472 Pfam Cytochrome P450 33 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2611 Ssu-Chr5 70823540 70825624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2611 31 376 Cytochrome P450 AT5G36110 34.078 1.11e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2611 K20667 - gmx:100782971 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2611 5 70823540 70825624 Ssu5g2611 5 70823540 70825624 ECH